Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1056g00008 ATGAATTACTGTGTTCCAGATTTCGAAATTGAAATGGATGATGATGAATATCCGATGCCCACGTCTTCTTCTGGGGTGCCCCGCCAAAAGAAGCCCTCCGTGGCCCAGGACGACATCATGGAGCTCCTGTGGCAAAACGGCCAGGTCGTGATGCAGAGCCAGAATCAACGGTCTCAGAGAAAACCGCACCCAGAGAGGTACCCTGATAGCGTAATTCCAGCCGGTCCATCGACGGCGAGTGAGATTCGACCCTCACAGCAAGTAGAACAACACTATCAGAATCAACATGTCTTCATGCAAGAAGATGAAATGATTTCCTGGCTTCATTATCCCATCGTAGATGATCCTCCCTTGGATCATAACTTCTGCGCCGACATCCTCTACCCGCAGCAGCCTGCTGTCAATAACATTTCCATGCAAAATCCTGACCGTAAGTCTCAAGCAACGGAACTTCGGCAGCCATCGAGGTCGGTCGCTCCACGGCCGCCGATTCCACCTCCACGGAAGCCGGAGCAGGTGCAGACGATGATACCGAACTTCGCGCACTTCTCGAAACACAATGCGAGAGTCGAAACGGGACCGTCGAGTTCGAAGACGGCAATGAAGGAATTGACGGTGGTAGATTCATGCGACACTCCGGCCTTGATGGCGTCGGCTTCCAGAGTCTCGGAGGCTTTCAGAAACTCGGCGGAGCCAACAAAGCGTGATGAGGATCCCGGAACCCTGAGCACTGCCGGGGCCGCGGCGCCTTCGACAACGTCGGTCGGCGGAGATACTGGCTGCAGGGGGACAACAACGTGCGAGATGATGGCGACGTCATCTCCGGGGGGTTCGAGCGGGGGTGCTGAACATGCAGGGAAACCTCCGACTGAAGATCGGAAACGGAAGGGCCGGGAACCCGATGAATCGGAGTGCCACAGCGAGGATGTCTACGGTGAATCTGCTGAAGCCAAGAAACAAAACTGCGGATCATCATCTACTAAAAGATCCCGTGCTGCAGAGGTTCATAATCTCTCGGAGAGGAGGCGTCGAGATAGGATTAATGAAAAGATGAGAGCCTTGCAAGAACTTATCCCTCGCTGCAATAAGTCCGACAAAGCTTCAATGCTGGATGAAGCAATTGAATATTTGAAGTCACTGCAATTACAAGTGCAGATGATGTCCATGGGATGTGGGATGGTACCAATGATGTTTCCCGGAATCCAACAGTATATGCCACCAATGGGGATGGGGATGGGGATGGGGATGGGGATGGGGATGGGCATGGGCATGGGCATGGGCATGGAAATGGGAATGAATAGGCCACTAATGCCATTTCCCAATGTGTTAGCTGCTTCAGCTATGCCACCGGCGGCGGCAGCTCAATTGGGACCAAGGTTCCCTATGCCTCATTTCCAAATGCCTCATGCCCCTCAGCCTGATTCATCTAGAATGCAAGCAGCCTCCAAATCAACCGGAAATAATATGCCTCCTTCTCTTGTCCCACCTGTTCCCAGTCAGTCACGGATCCCAAACTTTAGTGATCCTTATCAGCAATGCCTTGGTCCCCACCAGATGCATCTACAGTTCATGCAGAACCAGGCAATGAACAACCCAACTGTCAGCAAACCAAGTACCATTAAGAGCCATGAAAATGCAGAAAATAATCAACCCGGTCAACCAGAGTAA 1668 0.5222 MNYCVPDFEIEMDDDEYPMPTSSSGVPRQKKPSVAQDDIMELLWQNGQVVMQSQNQRSQRKPHPERYPDSVIPAGPSTASEIRPSQQVEQHYQNQHVFMQEDEMISWLHYPIVDDPPLDHNFCADILYPQQPAVNNISMQNPDRKSQATELRQPSRSVAPRPPIPPPRKPEQVQTMIPNFAHFSKHNARVETGPSSSKTAMKELTVVDSCDTPALMASASRVSEAFRNSAEPTKRDEDPGTLSTAGAAAPSTTSVGGDTGCRGTTTCEMMATSSPGGSSGGAEHAGKPPTEDRKRKGREPDESECHSEDVYGESAEAKKQNCGSSSTKRSRAAEVHNLSERRRRDRINEKMRALQELIPRCNKSDKASMLDEAIEYLKSLQLQVQMMSMGCGMVPMMFPGIQQYMPPMGMGMGMGMGMGMGMGMGMGMEMGMNRPLMPFPNVLAASAMPPAAAAQLGPRFPMPHFQMPHAPQPDSSRMQAASKSTGNNMPPSLVPPVPSQSRIPNFSDPYQQCLGPHQMHLQFMQNQAMNNPTVSKPSTIKSHENAENNQPGQPE 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1056g00008 555 MobiDBLite consensus disorder prediction 158 172 - -
Pral1056g00008 555 MobiDBLite consensus disorder prediction 463 499 - -
Pral1056g00008 555 Pfam Helix-loop-helix DNA-binding domain 335 381 IPR011598 GO:0046983
Pral1056g00008 555 PANTHER TRANSCRIPTION FACTOR PIF3 26 499 IPR044273 GO:0003700|GO:0006355
Pral1056g00008 555 MobiDBLite consensus disorder prediction 286 315 - -
Pral1056g00008 555 FunFam Basic helix-loop-helix transcription factor 326 389 - -
Pral1056g00008 555 MobiDBLite consensus disorder prediction 136 154 - -
Pral1056g00008 555 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 334 409 IPR036638 GO:0046983
Pral1056g00008 555 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 331 380 IPR011598 GO:0046983
Pral1056g00008 555 MobiDBLite consensus disorder prediction 245 279 - -
Pral1056g00008 555 SMART finulus 337 386 IPR011598 GO:0046983
Pral1056g00008 555 MobiDBLite consensus disorder prediction 136 172 - -
Pral1056g00008 555 MobiDBLite consensus disorder prediction 472 490 - -
Pral1056g00008 555 MobiDBLite consensus disorder prediction 221 346 - -
Pral1056g00008 555 MobiDBLite consensus disorder prediction 51 70 - -
Pral1056g00008 555 Gene3D - 326 389 IPR036638 GO:0046983
Pral1056g00008 555 MobiDBLite consensus disorder prediction 318 332 - -
Pral1056g00008 555 CDD bHLH_AtPIF_like 331 394 IPR047265 -
Pral1056g00008 555 MobiDBLite consensus disorder prediction 526 555 - -
Pral1056g00008 555 MobiDBLite consensus disorder prediction 9 33 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1056g00008 Pral-Chr1056 54616 59747 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1056g00008 1 386 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G20180 41.604 9.85e-68 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral1056g00008 HLH 2e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1056g00008 - - pcin:129287665 838.565