Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1048g00009 ATGGCTTTCTTCCTTGTCTTCCTCTCCCTTCTTGTTTCCTCTGCCACCGCTTGCGATCGCTGCGTCGTCCAATCCAAGGCCGCCTACTTCTCTAAATCCTCTGCTCTTTCCTCTGGGGCGTGCGGGTATGGCTCCTTGGCCGTGGGATTGAGCGGTGGACGCCTGGCAGCGGCGGTGCCTTCTGTCTACAAAGATGGCGCCGCTTGTGGTGCCTGCTTTCAGATAAGATGCAAGAACCCGAGTTTGTGCACAAAAGAAGGGACTACCGTGGTCGTCACCGATCTCAACAACAACAATCAAACTGATTTCGTGCTCAGCAGCAGAGCCTTCGTGGCCATGGCTAATAAGGGTATGAGCCAACAAATTTTGAAGCTCGGAATTGCCGACGTTGAATATAAGAGAGTACCATGCGAGTACAGAAACCGGAACCTGGGAGTACGGGTGGAAGAATCGAGCAAGAAACCGAACTACTTGGCAATTAAATTTCTGTATCAGGGAGGTCAGACGGAGATAGTGGGGGTGGATGTGGCTCAGGTGGGGTCTTCGAACTGGAACTTCATGAGCAGGAAGAATGGGGCCATATGGGCGACGGATCGGGTGCCGGCGGGTGCATTGCAGCTGCGGATAGTGGTGACGTCAGGGTACGACGGGAAATGGATATGGGCGCCCAAGGTGCTGCCTCAGGACTGGAAGGCTGGCCTCGTCTACGACTCCGGTGTTCAGATCACCGACATCGCCAAACAGGCCTGTTCTCCCTGCGACGATGGCTCCTGGTCCTGA 780 0.55 MAFFLVFLSLLVSSATACDRCVVQSKAAYFSKSSALSSGACGYGSLAVGLSGGRLAAAVPSVYKDGAACGACFQIRCKNPSLCTKEGTTVVVTDLNNNNQTDFVLSSRAFVAMANKGMSQQILKLGIADVEYKRVPCEYRNRNLGVRVEESSKKPNYLAIKFLYQGGQTEIVGVDVAQVGSSNWNFMSRKNGAIWATDRVPAGALQLRIVVTSGYDGKWIWAPKVLPQDWKAGLVYDSGVQITDIAKQACSPCDDGSWS 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1048g00009 259 PRINTS Major pollen allergen Lol pI signature 114 129 IPR005795 GO:0005576|GO:0019953
Pral1048g00009 259 PRINTS Major pollen allergen Lol pI signature 147 162 IPR005795 GO:0005576|GO:0019953
Pral1048g00009 259 PRINTS Major pollen allergen Lol pI signature 214 231 IPR005795 GO:0005576|GO:0019953
Pral1048g00009 259 PRINTS Major pollen allergen Lol pI signature 77 87 IPR005795 GO:0005576|GO:0019953
Pral1048g00009 259 PRINTS Major pollen allergen Lol pI signature 163 178 IPR005795 GO:0005576|GO:0019953
Pral1048g00009 259 SUPERFAMILY Barwin-like endoglucanases 7 140 IPR036908 -
Pral1048g00009 259 CDD DPBB_EXLA_N 13 139 - -
Pral1048g00009 259 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 156 238 IPR007117 -
Pral1048g00009 259 Gene3D - 10 138 IPR036908 -
Pral1048g00009 259 PRINTS Expansin/Lol pI family signature 184 198 IPR007118 GO:0005576
Pral1048g00009 259 PRINTS Expansin/Lol pI family signature 125 141 IPR007118 GO:0005576
Pral1048g00009 259 PRINTS Expansin/Lol pI family signature 224 238 IPR007118 GO:0005576
Pral1048g00009 259 PRINTS Expansin/Lol pI family signature 37 55 IPR007118 GO:0005576
Pral1048g00009 259 PRINTS Expansin/Lol pI family signature 59 77 IPR007118 GO:0005576
Pral1048g00009 259 Gene3D - 139 243 IPR036749 -
Pral1048g00009 259 PANTHER EXPANSIN-B3 11 241 - -
Pral1048g00009 259 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 38 142 IPR007112 -
Pral1048g00009 259 Pfam Expansin C-terminal domain 146 227 IPR007117 -
Pral1048g00009 259 SMART dpbb_1 56 132 IPR007112 -
Pral1048g00009 259 SUPERFAMILY PHL pollen allergen 142 238 IPR036749 -
Pral1048g00009 259 Pfam Lytic transglycolase 57 132 IPR009009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1048g00009 Pral-Chr1048 54105 55813 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1048g00009 15 259 Expansin Gene Family AT4G38400 65.587 1.84e-113 325
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1048g00009 - - pcin:129293424 464.922