Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1048g00004 ATGGAAGCTCTGCTTCTGAGTAAACCTGTTTCCCACTTCAGATTTACTTCCAAACACAAACATTCTTCACCTCTTTTCACTTTTCCCGCACGATCTCTTCGCCTTCAACCGACTGAAGCCGCCTTATTCACCTTCCGCGCCATTCAAAATCAAGAAAAGCAAATTTTCCAGGACACGCCCGCTCCCGTCGACAAGGAGGATGAATCCTACGGAGAAGTTAAAGGTATTATCGGAAGCAGAGCCCTTGAAGGCGGTACTGGCATGGAGTATCTGATCGAATGGAAAGATGGTCATGAGCCCTCCTGGGTCCCCTCCGATTTTATCGCCAAAGACGTGGTGGCCGAGTACGAGACCCGGTGGTGGACTGCGGCCAGGAAAGCCGACGAAGCAGCTCTCAAGCAGCTCATTGACGCCGACGACGGCAGGGACATCGACGCGGTCGACAGTGACGGGCGAACCGCGCTCCTGTTCGTGTCGGGTCTGGGGTCGGAGCCGTGCGTGAGGGCCCTGGCCGAAGCGGGGGCAAATCTGGACCATCGAGATAATTCGGGGGGACTGACGGCGCTCCACATGGCGGCCGGATACGTGAGGCCGGGCGTGGTGAAGCTTCTGGTGGATCTGGGGGCGGACGTTGAGGCGGAGGACGACAGGGGACGGACGCCGCTGGAGCTGGCGAAGGAAGTTCTGAACGCAACACCGAAGGGGAACCCGATGCAGTTCGGGAGGAGGATAGGGCTGGAGAGCGTGATAAGATATCTGGAGGGGGCAATATACGAGTACGCGGAGGTGGAGGGGATAGCGGAGAAGAGAGGGAAGGGGGAAAACACGGAGTATTTGGTGAAATGGAAAGACGGAGGGGAGAACGAGTGGGTGAAGGCGAAGTATGTAGCAGAGGATGTGGCTGGAGACTACGAAGCGGGACTGGAGTATGCGGTGGCGGAGAGAGTGATGGGGAGAAGAGAGGGGGAGGAGGGGAAGGCAGAGTTTCTGGTGAAATGGGCGGACATGGAGCAGCCCACGTGGGAGCCCCAAGAGAATGTGGATCCTCAGCTCGTACGGGAATTTGAGGAGGCCCAAAACACCAGCCCGCCCTGA 1095 0.5781 MEALLLSKPVSHFRFTSKHKHSSPLFTFPARSLRLQPTEAALFTFRAIQNQEKQIFQDTPAPVDKEDESYGEVKGIIGSRALEGGTGMEYLIEWKDGHEPSWVPSDFIAKDVVAEYETRWWTAARKADEAALKQLIDADDGRDIDAVDSDGRTALLFVSGLGSEPCVRALAEAGANLDHRDNSGGLTALHMAAGYVRPGVVKLLVDLGADVEAEDDRGRTPLELAKEVLNATPKGNPMQFGRRIGLESVIRYLEGAIYEYAEVEGIAEKRGKGENTEYLVKWKDGGENEWVKAKYVAEDVAGDYEAGLEYAVAERVMGRREGEEGKAEFLVKWADMEQPTWEPQENVDPQLVREFEEAQNTSPP 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1048g00004 364 SUPERFAMILY Chromo domain-like 309 358 IPR016197 -
Pral1048g00004 364 Gene3D - 307 359 - -
Pral1048g00004 364 Gene3D - 65 114 - -
Pral1048g00004 364 PANTHER MYOTROPHIN 72 285 - -
Pral1048g00004 364 SUPERFAMILY Chromo domain-like 66 120 IPR016197 -
Pral1048g00004 364 CDD CD3_cpSRP43_like 308 356 IPR030300 -
Pral1048g00004 364 Gene3D - 115 256 IPR036770 -
Pral1048g00004 364 ProSiteProfiles Ankyrin repeat profile. 184 216 IPR002110 GO:0005515
Pral1048g00004 364 SMART ANK_2a 115 146 IPR002110 GO:0005515
Pral1048g00004 364 SMART ANK_2a 184 213 IPR002110 GO:0005515
Pral1048g00004 364 SMART ANK_2a 150 179 IPR002110 GO:0005515
Pral1048g00004 364 Pfam Ankyrin repeats (many copies) 170 225 IPR002110 GO:0005515
Pral1048g00004 364 SMART chromo_7 259 309 IPR000953 -
Pral1048g00004 364 SMART chromo_7 310 360 IPR000953 -
Pral1048g00004 364 SMART chromo_7 69 121 IPR000953 -
Pral1048g00004 364 SUPERFAMILY Chromo domain-like 259 306 IPR016197 -
Pral1048g00004 364 Pfam Chromo (CHRromatin Organisation MOdifier) domain 313 357 IPR023780 -
Pral1048g00004 364 ProSiteProfiles Ankyrin repeat region circular profile. 184 216 - -
Pral1048g00004 364 SUPERFAMILY Ankyrin repeat 118 227 IPR036770 -
Pral1048g00004 364 Gene3D - 257 306 - -
Pral1048g00004 364 ProSiteProfiles Ankyrin repeat profile. 150 182 IPR002110 GO:0005515
Pral1048g00004 364 ProSiteProfiles Chromo and chromo shadow domain profile. 311 364 IPR000953 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1048g00004 Pral-Chr1048 21118 22784 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1048g00004 138 225 CAMTA Transcription Factor Family AT5G09410 36.170 4.28e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1048g00004 K12271 - csav:115700804 489.96