Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1047g00028 ATGGCAAAGTCTGGCGTGGTGGCGGTGGAACCTGATCCGACGGCGGCGACGAAGATGTCGGAGTTGAAGAAGGAGTTGAACAGATTGGTGAACTCCATCGTCGATGATGATGATTGCAGCGTTCAAACCATTGATCAAGCTAATGAAGCTCTTTCCGCTCTTAAGGACCTCAAGCTTCGAAGGAGATCATCGTCATCGCCATCTTCACAATCTTCGTCCTTGAAGTTAAACGGAAATTCCGCTTTTCCAGAAGAATTTAAGTGTCCTCTTTCTAAGGAATTGATGAGAGATCCTGTCATTGTGGCTTCTGGAAAGTTTTTGTTCATCTCAATTATGCAGACATATGATAGGCCCTTTATTCAAAAATGGCTGAAAGCTGGGAACAGAACTTGTCCTCAAACCCAACAAGTCCTCTCACACACTGTCCTAACTCCAAATCACCTCATAAGGGAGATGATAGAACAGTGGTGCAAGAACCATGGGGTGGAATTATCCAACCAACTTCACTATGTTTACAATGAGGAAGAGATAATAACAAAAGCAGATCGTGATCATTTTCATTCTCTGCTTGAGAAAATGTCCTCATCATCACTTTCTGAGCAGAAAGCAGCCGCGAAGCAGCTTCGGTTATTGACAAAGAAGATGCCTTTGTACAGAACACTCTTTGGTGAAACTTCACAAGCCACTTCTGAGATTCTCAAACCAATCTCTGCAAGCGACTCTTTTAACAACATCCATCCCGATCTCCAAGAAGACGTGATCACAACACTTTTGAACATCTCAATCCATGACAACAACAAGAAACTTGTCGCAGAAACTCCCTTGGTGATTTCACTCCTTGTGAAGGCCTTAAAGTCAGGAACTATAGAAACTAGAAGCAATTCTGCAGCTACCCTCTTCACTTTATCTGCTCTAGACTCAAACAAGGAGCTTATAGGTAAATCTGGTGCCTTAAAGCCATTAATTGACCTGTTAGAAGAAGGCCATCCTTTAGCCATGAAAGATGTTGCTTCAGCACTTTTCACCTTGTGTGTGGTTCATGAGAACAAGGCAAGAGCAGTGAGGGAAGGGGCAGTAGGTGTTATACTGAGGAAGATCTCAAGCCGGGTTTACGTAGACGAATTGCTCGCGATCCTCGCACTGCTCTCAAGTCATCAAAAGGCTGTTCAGGACATGGTAGATCTTGCAGCTGTTCCTAACTTGCTTAGCATCATGAGGGAGAGCAATTGTGAAAGAAACAAGGAGAACTGCATAGCTATTCTTCAAACTATATGTCAGTATGACAGAGCAAAGTTGAAGGAGATAAAAGAAGAGGAGATTACCTTTAAAACTATCACTGATCTTGCATTGAATGGAACTTCAAGGGCTAAGAGGAAGGCTAGTGGAATTCTTGAGAGACTGAATAGGGCTGTTAATATTACACATACTGCATAA 1434 0.4289 MAKSGVVAVEPDPTAATKMSELKKELNRLVNSIVDDDDCSVQTIDQANEALSALKDLKLRRRSSSSPSSQSSSLKLNGNSAFPEEFKCPLSKELMRDPVIVASGKFLFISIMQTYDRPFIQKWLKAGNRTCPQTQQVLSHTVLTPNHLIREMIEQWCKNHGVELSNQLHYVYNEEEIITKADRDHFHSLLEKMSSSSLSEQKAAAKQLRLLTKKMPLYRTLFGETSQATSEILKPISASDSFNNIHPDLQEDVITTLLNISIHDNNKKLVAETPLVISLLVKALKSGTIETRSNSAATLFTLSALDSNKELIGKSGALKPLIDLLEEGHPLAMKDVASALFTLCVVHENKARAVREGAVGVILRKISSRVYVDELLAILALLSSHQKAVQDMVDLAAVPNLLSIMRESNCERNKENCIAILQTICQYDRAKLKEIKEEEITFKTITDLALNGTSRAKRKASGILERLNRAVNITHTA 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1047g00028 477 SMART Ubox_2 85 156 IPR003613 GO:0004842|GO:0016567
Pral1047g00028 477 SUPERFAMILY ARM repeat 183 467 IPR016024 -
Pral1047g00028 477 Pfam U-box domain 83 160 IPR003613 GO:0004842|GO:0016567
Pral1047g00028 477 ProSiteProfiles U-box domain profile. 81 163 IPR003613 GO:0004842|GO:0016567
Pral1047g00028 477 SUPERFAMILY RING/U-box 81 164 - -
Pral1047g00028 477 Gene3D - 236 370 IPR011989 -
Pral1047g00028 477 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 79 163 IPR013083 -
Pral1047g00028 477 FunFam RING-type E3 ubiquitin transferase 372 473 - -
Pral1047g00028 477 PANTHER U BOX DOMAIN-CONTAINING 23 467 - -
Pral1047g00028 477 Gene3D - 372 472 IPR011989 -
Pral1047g00028 477 CDD RING-Ubox_PUB 83 143 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1047g00028 Pral-Chr1047 283980 287137 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1047g00028 152 477 U-box Gene Family AT3G07360 60.606 1.95e-133 387
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1047g00028 - - gmx:100777031 625.165