Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1047g00027 ATGGCAAAGTCTGGCGTGGTGGCGGTGGAACCTGATCCGACGGCGGCGACGAAGATGTCGGAGTTGAAGAAGGAGTTGAACAGATTGGTGAACTCCATCGTCGATGATGATGATTGCAGCGTTCAAACCATTGATCAAGCTAATGAAGCTCTTTCCGCTCTTAAGGACCTCAAGCTTCGAAGGAGATCATCGTCATCGCCATCTTCACAATCTTCGTCCTTGAAGTTAAACGGAAATTCCGCTTTTCCAGAAGAATTTAAGTGTCCTCTTTCTAAGGAATTGATGAGAGATCCTGTCATTGTGGCTTCTGGAAAGACATATGATAGGCCCTTTATTCAAAAATGGCTGAAAGCTGGGAACAGAACTTGTCCTCAAACCCAACAAGTCCTCTCACACACTGTCCTAACTCCAAATCACCTCATAAGGGAGATGATAGAACAGTGGTGCAAGAACCATGGGGTGGAATTATCCAACCAACTTCACTATGTTTACAATGAGGAAGAGATAATAACAAAAGCAGATCGTGATCATTTTCATTCTCTGCTTGAGAAAATGTCCTCATCATCACTTTCTGAGCAGAAAGCAGCCGCGAAGCAGCTTCGGTTATTGACAAAGAAGATGCCTTTGTACAGAACACTCTTTGGTGAAACTTCACAAGCCACTTCTGAGATTCTCAAACCAATCTCTGCAAGCGACTCTTTTAACAACATCCATCCCGATCTCCAAGAAGACGTGATCACAACACTTTTGAACATCTCAATCCATGACAACAACAAGAAACTTGTCGCAGAAACTCCCTTGGTGATTTCACTCCTTGTGAAGGCCTTAAAGTCAGGAACTATAGAAACTAGAAGCAATTCTGCAGCTACCCTCTTCACTTTATCTGCTCTAGACTCAAACAAGGAGCTTATAGGTAAATCTGGTGCCTTAAAGCCATTAATTGACCTGTTAGAAGAAGGCCATCCTTTAGCCATGAAAGATGTTGCTTCAGCACTTTTCACCTTGTGTGTGGTTCATGAGAACAAGGCAAGAGCAGTGAGGGAAGGGGCAGTAGGTGTTATACTGAGGAAGATCTCAAGCCGGGTTTACGTAGACGAATTGCTCGCGATCCTCGCACTGCTCTCAAGTCATCAAAAGGCTGTTCAGGACATGGTAGATCTTGCAGCTGTTCCTAACTTGCTTAGCATCATGAGGGAGAGCAATTGTGAAAGAAACAAGGAGAACTGCATAGCTATTCTTCAAACTATATGTCAGTATGACAGAGCAAAGTTGAAGGAGATAAAAGAAGAGGAGATTACCTTTAAAACTATCACTGATCTTGCATTGAATGGAACTTCAAGGGCTAAGAGGAAGGCTAGTGGAATTCTTGAGAGACTGAATAGGGCTGTTAATATTACACATACTGCATAA 1410 0.4312 MAKSGVVAVEPDPTAATKMSELKKELNRLVNSIVDDDDCSVQTIDQANEALSALKDLKLRRRSSSSPSSQSSSLKLNGNSAFPEEFKCPLSKELMRDPVIVASGKTYDRPFIQKWLKAGNRTCPQTQQVLSHTVLTPNHLIREMIEQWCKNHGVELSNQLHYVYNEEEIITKADRDHFHSLLEKMSSSSLSEQKAAAKQLRLLTKKMPLYRTLFGETSQATSEILKPISASDSFNNIHPDLQEDVITTLLNISIHDNNKKLVAETPLVISLLVKALKSGTIETRSNSAATLFTLSALDSNKELIGKSGALKPLIDLLEEGHPLAMKDVASALFTLCVVHENKARAVREGAVGVILRKISSRVYVDELLAILALLSSHQKAVQDMVDLAAVPNLLSIMRESNCERNKENCIAILQTICQYDRAKLKEIKEEEITFKTITDLALNGTSRAKRKASGILERLNRAVNITHTA 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1047g00027 469 SUPERFAMILY RING/U-box 81 156 - -
Pral1047g00027 469 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 79 155 IPR013083 -
Pral1047g00027 469 SMART Ubox_2 85 148 IPR003613 GO:0004842|GO:0016567
Pral1047g00027 469 Pfam U-box domain 83 152 IPR003613 GO:0004842|GO:0016567
Pral1047g00027 469 Gene3D - 365 464 IPR011989 -
Pral1047g00027 469 CDD RING-Ubox_PUB 83 135 IPR045210 -
Pral1047g00027 469 Gene3D - 229 364 IPR011989 -
Pral1047g00027 469 FunFam RING-type E3 ubiquitin transferase 364 465 - -
Pral1047g00027 469 FunFam RING-type E3 ubiquitin transferase 81 155 - -
Pral1047g00027 469 ProSiteProfiles U-box domain profile. 81 155 IPR003613 GO:0004842|GO:0016567
Pral1047g00027 469 SUPERFAMILY ARM repeat 175 459 IPR016024 -
Pral1047g00027 469 PANTHER U BOX DOMAIN-CONTAINING 23 459 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1047g00027 Pral-Chr1047 283980 287137 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1047g00027 144 469 U-box Gene Family AT3G07360 60.606 2.12e-133 386
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1047g00027 - - gmx:100777031 630.943