Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1047g00025 ATGGGGCCAAATGCAGGTTCTTTGTCGGCGGTGGCGAAACAGGCGGAGCAACTTCGAATAAACGGCAATAATTATTTCAAGAAAGATCGGTTCGGAGCTGCCATCGATGCTTATACGGAGGCAATTACTCTAATGCCCAACAATCCGGTTTATTTCACGAATCGTGCTCTATGCCATCGCAAGCGGAATGACTGGGCAAGAGTGGAGGAAGATTGTCGGAAAGCTATTCAACTAAATCACAATTCAGTCAAGGCTTTAGATCTTGGGAGGGGAGCCAATCCTAAGGGCTATATGGTAGAAGAGATCTGGCAGGAGCTATCGAAAGCAAAATACCTAGAATGGGAACGTTCATCTACCGAGCGATCGTGGGAATTGCAGAGCTTGAAAGAAGCTTGCGAGTCTGCTTTAAAGGAAAAGAGTCTACATGGCATCTCCCAAGAGGAAGGCTTGATAGATGAAGATCCAACCACCCTTTCAGAACAGCTCGAGGCTTTAGGAAGAGTGTTTGGTAAAGCTGCAGAGGACGATACACCCACTGAGGTGCCAGATCACCTTTGCTGTAGAATTACGCTTGAACTTTTCCGGGATCCTGTCATCACTCCTAGTGGTCTTACGTATGAGAGGGCGGTGATTCTTGACCATCTTGAAAAGGTGGGTAGGTTTGATCCAGTCACCCGAGAACCGCTTAATCCATCCCAGTTAGTACCAAACTTGGCCATAAAGGAAGCAGTCCGGGCATTCTTGGATAAACATGGATGGGCCTACAAGATAGACTAA 777 0.471 MGPNAGSLSAVAKQAEQLRINGNNYFKKDRFGAAIDAYTEAITLMPNNPVYFTNRALCHRKRNDWARVEEDCRKAIQLNHNSVKALDLGRGANPKGYMVEEIWQELSKAKYLEWERSSTERSWELQSLKEACESALKEKSLHGISQEEGLIDEDPTTLSEQLEALGRVFGKAAEDDTPTEVPDHLCCRITLELFRDPVITPSGLTYERAVILDHLEKVGRFDPVTREPLNPSQLVPNLAIKEAVRAFLDKHGWAYKID 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1047g00025 258 Pfam U-box domain 181 253 IPR003613 GO:0004842|GO:0016567
Pral1047g00025 258 SUPERFAMILY RING/U-box 173 255 - -
Pral1047g00025 258 ProSiteProfiles TPR repeat profile. 15 48 IPR019734 GO:0005515
Pral1047g00025 258 SMART tpr_5 15 48 IPR019734 GO:0005515
Pral1047g00025 258 SMART tpr_5 49 82 IPR019734 GO:0005515
Pral1047g00025 258 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 179 257 IPR013083 -
Pral1047g00025 258 Gene3D Tetratricopeptide repeat domain 3 142 IPR011990 GO:0005515
Pral1047g00025 258 SMART Ubox_2 184 247 IPR003613 GO:0004842|GO:0016567
Pral1047g00025 258 CDD RING-Ubox_CHIP 181 251 IPR045202 -
Pral1047g00025 258 ProSiteProfiles U-box domain profile. 180 254 IPR003613 GO:0004842|GO:0016567
Pral1047g00025 258 PANTHER E3 UBIQUITIN-PROTEIN LIGASE CHIP 84 256 IPR045200 GO:0000209|GO:0061630
Pral1047g00025 258 SUPERFAMILY TPR-like 14 86 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1047g00025 Pral-Chr1047 275556 281210 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1047g00025 15 257 U-box Gene Family AT3G07370 64.045 2.24e-122 348
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1047g00025 K09561 - gmx:100796519 400.208