Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1046g00001 ATGAGGAATAATAAGGTTGTAGACCAACAATTATCTACTGTCCGATCCATCGTTGGCGCTGAGTATTCTGACATGGATATCATTAGAGCCCTGCACATGGCTAACAATGACCTCACCGCCGCCATTAACATCATCTTTGATACCCCCAAGTTCAAATTGAAAGAGAGGTTAAGTGTGGGGACTCAGAGGAATTCACAAGTTTCGCATCGAAGTTCAAGCTCTGATGCTGGAATTGGAGGTGGAAGTGTCACGGTGAAGTCCAAGCCAACTGCTTCTGAGGACAATAATCGATCTCTGGGGTCGGAAGCAAATGTTGCCGACTCGGTTTCCAACTCAGGTGATTGTACCGCCGAGGATGTGGGAGGGCCTTCAAGTTCAGCTGCAAGTGATTGGTGGTTCGTGGGTTGTGGGGAAATGGCGGGTCTTTCGACCAGTAAAGGGAGGAGTATGAATCCTGGTGATCAAGTATTGTTCAAGTTCCCGCTGAAGATAGGGTCAACTACGCCATCTCCAGGTAAGGGTTTTGGACGGGGACGACCGGCAGCAACAGCTTGTTCGGAGATAGTGCGGTTCTATACCAAGGAAACAGGAGAGATTGGTAGAATACCGAATGAATGGGCTAGGTGTCTCTTGCCCCTTGTACGGGATAAGAAAGTTAGGATTGATGGGCATTGCAAACATGCTCCTAATAATTTGAGCATCATGGACACCATTATTTTGTCAATTAGAGTATTCATCAATAGCTCAATGTTTCGCAAACGTCACCAGGTTTCTCTCAAGGACGCCACAAATTCCACTGATGAATCAGTATTTCATCCTCTTCCAACCTTGTTTAGGTTGCTAGGCTTGAGCCCTTTCAAAAAGGCAGAGTTCACTCCTGGTGACTTGTACTCAAAGAAGCGCCCTTTCAATGAAAAGGAGGACTCTTCTCTTCAGGCAACATTACTGCACATCAAATCCAACCGTCCTTCTGTGAATGATAATGAGGTAGACAGTGAGAAATCAATATCTGATACTGATCTTGACAAGATTGTTGGTGTTGGAGCTTGCTCAGAGCTAGAGGAAATGGATCCCCCTGGTAGTCTTCAGTGTGAATTGCGGCCCTATCAAAAGCAAGCTCTTCATTGGATGATCCAGCTGGAGAAGGGACGGCCTATGGATGAGGCAGCAACAACACTTCATCCATGCTGGGAGGCATATCGCCTGGCAGACGAGAGGGAGCTGGTTATTTATTTGAATGTTTTCTCTGGAGAAGCCACAATAGAATTTCCAAGCACACTTCAGATGGCTAGAGGAGGAATTTTGGCAGATGCTATGGGGCTTGGAAAGACCATTATGACCATAGCACTCCTCGTTGCCCATTCAGGCACTGGTGGTTCATCAAGTAGTCAACTCATGGATCAACCCTTGTCTGAAAGTGAAGTTAATGACATGGTGCAAAACTCTTCAAATGTACCTAAGAAGGCAAACAAGTTTTCTAGTTTTGATAAACTGAGGAAGCAAAGGAATGCTCTAACAAATGGTGGCAGTCTGATAATATGTCCCATGACACTTCTAGGACAATGGAAGGCAGAGATTGAAACTCATGTGCAGACTGGATCTCTGTCTTTATATGTTCATTATGGACAGAGTAGACCAAAAGATGCAAAAACTCTGGCTCAGAGTGATGTTGTAATTACTACATATGGAATTGTAGCCTCTGAGTTTTCCGGCGAGAATGCAGAGGATAATGGTGGACTTTTCTCAATTCGATGGTTTAGGGTGGTTCTAGACGAGGCACATACTATAAAATCTTCCAAAAGCCAAATATCGATGGCTACTTCAGCTTTAATTGCTGACAGACGTTGGTGTCTTACTGGCACTCCTATCCAGAACAACCTTGAAGATGTTTACAGTCTTCTTCGATTTCTGAGAATAGAGCCTTGGGGTCATTGGGCCTGGTGGAACAAACTCGTTCAGAAACCATTCGAGGAGGGTGATGAGAGAGGGCTGAAGTTGGTTCAATCCATTCTGAAGCCAATCATGTTGAGGAGAACTAAACATAGCATGGATCGCGACGGCAAGCCTATTATTGTTCTTCCTCCAGCTGAAGTGCAGATAATTTACTGTGAACTCACTGAAGCTGAAAAGGACTTTTATGAGGCACTATTCAAAAGATCTAAGGTCAAGTTTGATCAGTTTGTTGAGCAAGGGCGCATTCTTCATAATTATGCTTCCATATTGGAGCTGCTCTTACGTCTTCGTCAATGCTGTGACCATCCATTTCTTGTTATGAG 2276 0.4464 MRNNKVVDQQLSTVRSIVGAEYSDMDIIRALHMANNDLTAAINIIFDTPKFKLKERLSVGTQRNSQVSHRSSSSDAGIGGGSVTVKSKPTASEDNNRSLGSEANVADSVSNSGDCTAEDVGGPSSSAASDWWFVGCGEMAGLSTSKGRSMNPGDQVLFKFPLKIGSTTPSPGKGFGRGRPAATACSEIVRFYTKETGEIGRIPNEWARCLLPLVRDKKVRIDGHCKHAPNNLSIMDTIILSIRVFINSSMFRKRHQVSLKDATNSTDESVFHPLPTLFRLLGLSPFKKAEFTPGDLYSKKRPFNEKEDSSLQATLLHIKSNRPSVNDNEVDSEKSISDTDLDKIVGVGACSELEEMDPPGSLQCELRPYQKQALHWMIQLEKGRPMDEAATTLHPCWEAYRLADERELVIYLNVFSGEATIEFPSTLQMARGGILADAMGLGKTIMTIALLVAHSGTGGSSSSQLMDQPLSESEVNDMVQNSSNVPKKANKFSSFDKLRKQRNALTNGGSLIICPMTLLGQWKAEIETHVQTGSLSLYVHYGQSRPKDAKTLAQSDVVITTYGIVASEFSGENAEDNGGLFSIRWFRVVLDEAHTIKSSKSQISMATSALIADRRWCLTGTPIQNNLEDVYSLLRFLRIEPWGHWAWWNKLVQKPFEEGDERGLKLVQSILKPIMLRRTKHSMDRDGKPIIVLPPAEVQIIYCELTEAEKDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLVM 758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1046g00001 758 CDD UBA_Cbl_like 11 49 - -
Pral1046g00001 758 MobiDBLite consensus disorder prediction 59 123 - -
Pral1046g00001 758 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 690 757 IPR027417 -
Pral1046g00001 758 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 424 640 IPR014001 -
Pral1046g00001 758 Gene3D - 424 691 IPR038718 -
Pral1046g00001 758 SMART ultradead3 362 659 IPR014001 -
Pral1046g00001 758 Pfam SNF2-related domain 369 756 IPR000330 GO:0005524|GO:0140658
Pral1046g00001 758 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 124 758 - -
Pral1046g00001 758 FunFam DNA repair protein RAD5B 421 679 - -
Pral1046g00001 758 Gene3D - 694 758 IPR027417 -
Pral1046g00001 758 CDD DEXDc_SHPRH-like 366 678 - -
Pral1046g00001 758 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 353 678 IPR027417 -
Pral1046g00001 758 SMART HIRAN_2 134 246 IPR014905 GO:0003676|GO:0008270|GO:0016818
Pral1046g00001 758 Pfam HIRAN domain 135 242 IPR014905 GO:0003676|GO:0008270|GO:0016818
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1046g00001 Pral-Chr1046 289 5634 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1046g00001 4 758 RAD5 or RAD16-like Gene Family AT5G22750 64.868 0.0 999
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pral1046g00001 SNF2_N 1.3e-87 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1046g00001 K15505 - qsa:O6P43_000417 1135.17