Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1042g00015 ATGGAGTTCTGGGGCGTTGAGGTCAAGGGTGGGACACCTGTTGAAGTAGACCCAGATGAGTTTGGTAAATGCATACACCTGTCTCAGGCTGCTCTTGGTGAGGCAAAGAATAAATCAAGTGAACCTGTGATCATTTATCTGAAGTTTGATGACCAGAAGCTTGTTTTAGGAACCCTTTCCCCAGAGAAATTCCCTCAACTATCTTTTGATTTGGTTCTAGAGAAAAAGTTTGAGCTCTCTCACAATTGGAAAAATGGAAGTGTTTATTTCTGTGGTTACAAAGCCGAATTACCAGGGGAGATGGATGAGGAACTGACTGACAGTGAAGATGATGTGGGTAACCCAGTGCTGACCAGAGAGAATGCAAAACTTGATATAAAGCCTGAAGTAGCAAAGGCTGCTGCATCTAAAAGTAATGATGTTAAGCCTGCCGATTCAAAAAAGCAAGTCAAGGTTGTGGATCCAAAGAAAGATGAAGATGAATCAGATGATGAAGAGGATGATGATGAAGATGACGAAGATGATGAAGATGACAGTTCTGATGAGGATATTTTGGGTGGTGATGTTGATGGTAGTGACGAGAGTGAGAGTGATGAAGATGATGATGAAACCCCTCCTAAGAAGGTCGATCATGCCAAGAAGAGACCTAATGAATCTGCGCTGAAAACTCCTGTTCCTGCGAAGAAAGCAAAAGCTGCTACCCCTCAAAAGACTGATGGTAAGAAAGGCGGCCATGTAGCAACTCCTTATCCACTGAAGAAGGATGGAAAGACTCCTAAAAGCGACCAAACTCCCAAATCCGGCGGACAGTTCACCTGCAAATCCTGTAGCAAGACTTTTAACTCAGAAGGGGGTTTGCAACAACATTCAAAGGCTAAGCATGGGGGTCAGTGA 894 0.4374 MEFWGVEVKGGTPVEVDPDEFGKCIHLSQAALGEAKNKSSEPVIIYLKFDDQKLVLGTLSPEKFPQLSFDLVLEKKFELSHNWKNGSVYFCGYKAELPGEMDEELTDSEDDVGNPVLTRENAKLDIKPEVAKAAASKSNDVKPADSKKQVKVVDPKKDEDESDDEEDDDEDDEDDEDDSSDEDILGGDVDGSDESESDEDDDETPPKKVDHAKKRPNESALKTPVPAKKAKAATPQKTDGKKGGHVATPYPLKKDGKTPKSDQTPKSGGQFTCKSCSKTFNSEGGLQQHSKAKHGGQ 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1042g00015 297 MobiDBLite consensus disorder prediction 262 288 - -
Pral1042g00015 297 MobiDBLite consensus disorder prediction 202 218 - -
Pral1042g00015 297 ProSitePatterns Zinc finger C2H2 type domain signature. 273 294 IPR013087 -
Pral1042g00015 297 MobiDBLite consensus disorder prediction 159 201 - -
Pral1042g00015 297 Pfam Nucleoplasmin-like domain 3 93 IPR041232 -
Pral1042g00015 297 MobiDBLite consensus disorder prediction 141 158 - -
Pral1042g00015 297 FunFam Histone deacetylase HDT1 1 99 - -
Pral1042g00015 297 SUPERFAMILY beta-beta-alpha zinc fingers 260 293 IPR036236 -
Pral1042g00015 297 ProSiteProfiles Zinc finger C2H2 type domain profile. 271 297 IPR013087 -
Pral1042g00015 297 Gene3D Nucleoplasmin core domain 1 98 - -
Pral1042g00015 297 SMART c2h2final6 271 294 IPR013087 -
Pral1042g00015 297 Gene3D Classic Zinc Finger 269 297 - -
Pral1042g00015 297 MobiDBLite consensus disorder prediction 102 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1042g00015 Pral-Chr1042 36252 41308 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1042g00015 1 294 C2H2 Transcription Factor Family AT5G03740 42.765 2.79e-58 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pral1042g00015 NPL 6.5e-12 CL0055
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1042g00015 - - gmx:100792094 295.434