Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1016g00004 ATGACGAGAGAGGTTGTAGGGATGAGGAAGACGTTGGTGTTCTACAGGAACAGAGCTCCCAATGGTATCAAAACGGGTTGGATCATGCATGAGTTCCGCTTGGAGACCCCACAAATGCCCCCTAAGGAAGACTGGGTTTTGTGTAGAGTATTCCACAAAACCAAATCAGATGACAACACCAACAACAGCAATATCAGTGCCGAACTCATGTGGGATTCCATTTCATCTCCTTCTCTAACTTTGGCTTCTTCGTCTTCTCCAACCAGCCACAACTTCCCTCTCCTCGCCTACAACCAACTTTCCTCTTCTTCTACTTCCTCCATCCCCACCTTCATTAATAACACCCAACCCAACCATCATTCTAATTCTCTCCTCAACTTTCTTCAATTTTCTCGGGAAACAAACACCGCCACCACCAGCACCGTTACTCAGGACCAGATTAGCCCCAGAGGCGGCGGCGGCGGCGATGATGGCTATGGCGGCTTCTTCTGGGACATGGGCCTCGAAGATAACAGCGGTTTTCAGAATGGCGTCGATGCTATGCGATCCTTCGAGGTTGATAATAATAGCATGGTCTTGTTGTGA 585 0.4872 MTREVVGMRKTLVFYRNRAPNGIKTGWIMHEFRLETPQMPPKEDWVLCRVFHKTKSDDNTNNSNISAELMWDSISSPSLTLASSSSPTSHNFPLLAYNQLSSSSTSSIPTFINNTQPNHHSNSLLNFLQFSRETNTATTSTVTQDQISPRGGGGGDDGYGGFFWDMGLEDNSGFQNGVDAMRSFEVDNNSMVLL 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1016g00004 194 Gene3D NAC domain 1 58 IPR036093 GO:0003677|GO:0006355
Pral1016g00004 194 SUPERFAMILY NAC domain 3 53 IPR036093 GO:0003677|GO:0006355
Pral1016g00004 194 Pfam No apical meristem (NAM) protein 4 34 IPR003441 GO:0003677|GO:0006355
Pral1016g00004 194 ProSiteProfiles NAC domain profile. 1 53 IPR003441 GO:0003677|GO:0006355
Pral1016g00004 194 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1016g00004 Pral-Chr1016 19884 21345 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1016g00004 4 154 NAC Transcription Factor Family AT1G56010 37.975 2.44e-20 84.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pral1016g00004 NAM 3.9e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1016g00004 - - gmx:100783645 201.445