Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1016g00003 ATGGAATCAGAAAATAGAAGAAAATCTGTGAAACCCAAAAATGAAGAAATCCCTTCAGTTCCCCCTGGTTTTAGATCCCTTACTTCTTTCATACTAAAAAGGGTTGCAAACACTGATAAATCTGAATGTGATCCAATTTGCATGGAGAGTATATTGAAGCTAAATGATGCTGCTGCATATAAGGCAATTCTTAAGCATCGTCCATGGATACTTTTTGATCAAAGTGACCATGACCTTAAGAAGTCTGACGCAGAGCATTTTCCTCAGGGGTTTTCTTCAAATGCTCATCTTCCAAAAGGGGTTACTGTTGGTTGTCCAGAATGTAGTGATTGTCTGAAGGTAGCTGCAAGGTGGTGCCCTGAGGATGCAAGAAGAGATGTCCTTGATGAAGTTCAAACTTTCCGCCCAACAGAAAAGGAATTTGAAGACACACTTAAATATATTGCAAGCATACGTTCCAAAGCAGAGCCCTATGGAATTTGTCGTATTATTCCTCCTCCTACCTGGGAAGCACCATGTCTTCCCGAGGAAAAAAATATATGGGAAGATGCCAAAGTTGTTACTCACATTCAGCGGATTGATGGACTTCAAATTCAGTTCCAACAAGAAGTTATGGACAACTCTTCTGGAAATGCAGAGACCAACACCAGAAGAGGTCTGAGAGTAGCTTTGGACTCTCAACCTGGTAATGAAAACCCCCATGATGTTGAAGACTCTAAGTCCAAACCTGGCCCTACATTCAATCTCAGTACATTTAAGAAATTTGCTGATGGTTTCAAGGCCAACTACTTCAACTGTGACAATAATGATGTGGGTTCTGACGAAAAGTGGGAGCCAACGGTGGAAAATATTGAGGGTGAGTATGGACGGATTATTCAAAATCCAACTCATGAAATTGAGGTGCTTGTTGGTAACAACTTGGGGGCTGGAGTTTTAAGCACTGGATTTCCAATAATGCCTGATCCTCTGGAGTCATGCAAATATCCGAAGTGTATGAGATCTGGATGGAACTTAAATAATATGCTTACACAATCTGGTTCTCTTCTTTCATTTGAAAGCTCTGAGGTTTCTAGTAAATTTGCCCCTCGGGTTCATGTGGGAATGTGTTTTTCTTCATTCAATTGGAAAGTAGAAGAGCACCAGTTGTACACATTGTGTTACATGCATGTGGGAGAGCCTAGAGCTTGGTATAGCATTCCGGGAAGATTTGCTGCTGACTTTGAAACAGTGAGGAAGAAGCATCTCCCAGTTTTATTTGCAGAACAGCCTGACTTGCGTGACAAGTTGTTATCCTCCACCTTATTGAAGTCAGAGGGTATACCAGTATATCGCTGTGTTCAGTATCCCAGGGAGTTCGTTCTTGTTTTCCCAGGAGCATACCATTCTGGATTTGATTGTGGTTTCAATTGCTCTGAATCAGTCAGTTTTGCTCCTCTTGATTGGCTGATCCACGGACAGAATGTTGTAGAGTTATATTGTGAACAAAGGAGAAAGACTTCAATATCATATGATAAGTTGCTTCTTGGGGCGGCAAGGAAAGCTGTTAGGGCACAATTTGAGATTGAACTCTGCGGGATGGGTAACCCAGATAATTTACACTGGAAAGATGCATGTGGAAGGGATGGGATATTAACAAAAGCTTTTGATTTACGGAGAAAGAGTGAAAGTTCGAAGAGGGAATTTCTTTGCGCTTCCCTGAAATCACAGAGAATGGAAAAGGACTTTGATGTCACATGCAAAAGAGAATGTTGCGTATGTCTGCGTGATTTACACTTATCTGCCATAAGTTGTCCATGCTCAAACGACAAATTTGCATGTCTTAATCATGCAAAGCAGCTGTGTTGCTGCCCTTGGAGTGACAGATCCATTCTCTGCCGATACGAAATCAGCGAGTTGGATACCCTTTGTCTTGCTTTGGAGGGAAAAGCAAGTGTTGTCCACAAATGGGCCAAAGTCGATCTTGGATTAACTGTGCACTCCCTTGCCTCCAAGAGAAATATGAGTGGTTCTTCGTCTAACCCTTTGGCCAGAGAAGCATTTTTGAATTCTCTGAAACGGAAAAGAGATGCAGTCGAGTCCGAAGGTACGAGCACGGATGGTATCTCTTCCAGCATCGAGGCAAAATTGAAGGCACCTTTACCTGAATCAACATGTGTTGGTAAGTCCATGGGAAAACAGAAAACGACAGGCCAACAATCTACAGCAAGACACATTAAGAGTGGGGCCAATTCTGCTGCGGCCAATATACCTGATCCGAAGTCACGGAAGGTTCAGTCGTCAATTCCAAGTTTAGCTAAAAATGACCCAAAAGTGGGTAGGGATTTTCTAGGTCTTAGTCTAACGTCAGGTCATATGGCACTGCTGCCTGAAGTCAGGCCATTTGATGTTTCTTCAGATAGTTCATCTTCATTATCAGAATCCGATGATGACGCTTAA 2436 0.4232 MESENRRKSVKPKNEEIPSVPPGFRSLTSFILKRVANTDKSECDPICMESILKLNDAAAYKAILKHRPWILFDQSDHDLKKSDAEHFPQGFSSNAHLPKGVTVGCPECSDCLKVAARWCPEDARRDVLDEVQTFRPTEKEFEDTLKYIASIRSKAEPYGICRIIPPPTWEAPCLPEEKNIWEDAKVVTHIQRIDGLQIQFQQEVMDNSSGNAETNTRRGLRVALDSQPGNENPHDVEDSKSKPGPTFNLSTFKKFADGFKANYFNCDNNDVGSDEKWEPTVENIEGEYGRIIQNPTHEIEVLVGNNLGAGVLSTGFPIMPDPLESCKYPKCMRSGWNLNNMLTQSGSLLSFESSEVSSKFAPRVHVGMCFSSFNWKVEEHQLYTLCYMHVGEPRAWYSIPGRFAADFETVRKKHLPVLFAEQPDLRDKLLSSTLLKSEGIPVYRCVQYPREFVLVFPGAYHSGFDCGFNCSESVSFAPLDWLIHGQNVVELYCEQRRKTSISYDKLLLGAARKAVRAQFEIELCGMGNPDNLHWKDACGRDGILTKAFDLRRKSESSKREFLCASLKSQRMEKDFDVTCKRECCVCLRDLHLSAISCPCSNDKFACLNHAKQLCCCPWSDRSILCRYEISELDTLCLALEGKASVVHKWAKVDLGLTVHSLASKRNMSGSSSNPLAREAFLNSLKRKRDAVESEGTSTDGISSSIEAKLKAPLPESTCVGKSMGKQKTTGQQSTARHIKSGANSAAANIPDPKSRKVQSSIPSLAKNDPKVGRDFLGLSLTSGHMALLPEVRPFDVSSDSSSSLSESDDDA 811
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1016g00003 811 Pfam C5HC2 zinc finger 583 635 IPR004198 -
Pral1016g00003 811 ProSiteProfiles JmjC domain profile. 330 493 IPR003347 -
Pral1016g00003 811 SMART JmjN_1 130 171 IPR003349 -
Pral1016g00003 811 ProSiteProfiles JmjN domain profile. 131 172 IPR003349 -
Pral1016g00003 811 SMART cupin_9 333 493 IPR003347 -
Pral1016g00003 811 MobiDBLite consensus disorder prediction 716 768 - -
Pral1016g00003 811 MobiDBLite consensus disorder prediction 1 21 - -
Pral1016g00003 811 MobiDBLite consensus disorder prediction 721 741 - -
Pral1016g00003 811 MobiDBLite consensus disorder prediction 224 245 - -
Pral1016g00003 811 PANTHER LYSINE-SPECIFIC DEMETHYLASE 126 726 - -
Pral1016g00003 811 Pfam jmjN domain 133 165 IPR003349 -
Pral1016g00003 811 Gene3D Cupin 116 477 - -
Pral1016g00003 811 SUPERFAMILY Clavaminate synthase-like 327 515 - -
Pral1016g00003 811 MobiDBLite consensus disorder prediction 792 811 - -
Pral1016g00003 811 Pfam JmjC domain, hydroxylase 364 476 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1016g00003 Pral-Chr1016 5575 11323 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1016g00003 1 667 JUMONJI Transcription Factor Family AT1G08620 45.377 0.0 573
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Pral1016g00003 JmjC 2.3e-29 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1016g00003 K11446 - pcin:129315581 1327.38