Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1010g00005 ATGCATCGCCGTCTTCTCGACGCCGGGCTAAGTGTGTCTCCGGCATATAGGAGTAAGACCCATGAATCGTTCGTGCGAGATGTAAACTTCGACGCGAACATGGTGATCATACTGGCGGCTTTGTTGTGCGCATTAATATGCGCGCTTGGGTTGAACTCGATGGTGCGATGTGTGTTGCGTTGTAGCCAAAGATTTTCCACAGAGACCACAGAACAAACAGCTGCCAGGCTTGCCTCAACGGGCCTGAAGAAACGTCACCTGAGCCGGATTCCGGTGAAAGAGTACGGGCCCGGGGCGAACATACCGGCGACGGAGTGCCCGATATGCCTCGGGGAGTTCGAGAAAGGAGATAAGGTGCGAATGCTGCCAAAATGCAATCACGGGTTCCATGTGAGGTGCATAGACACATGGCTTTTGTCACATTCTTCTTGCCCCAACTGTCGCCATTCGCTGCTAGAGAAATCCACAAATCCGAGTTTGAATTCGAATGGGAGGACTGAAGGAGGAGAACCCGCCGGAGCTCAGGCACCGGCAGATGGGCCCGGCAACATGCAAGTCCACGCCGTGGTCGTCGACGAGCAGGCAAGTTGA 591 0.5465 MHRRLLDAGLSVSPAYRSKTHESFVRDVNFDANMVIILAALLCALICALGLNSMVRCVLRCSQRFSTETTEQTAARLASTGLKKRHLSRIPVKEYGPGANIPATECPICLGEFEKGDKVRMLPKCNHGFHVRCIDTWLLSHSSCPNCRHSLLEKSTNPSLNSNGRTEGGEPAGAQAPADGPGNMQVHAVVVDEQAS 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1010g00005 196 SMART ring_2 106 147 IPR001841 -
Pral1010g00005 196 PANTHER RING-H2 FINGER PROTEIN ATL78 23 163 IPR044602 GO:0016567|GO:0016740
Pral1010g00005 196 SUPERFAMILY RING/U-box 105 156 - -
Pral1010g00005 196 MobiDBLite consensus disorder prediction 155 185 - -
Pral1010g00005 196 CDD RING-H2_EL5-like 105 148 - -
Pral1010g00005 196 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 153 IPR013083 -
Pral1010g00005 196 Pfam Ring finger domain 105 148 IPR001841 -
Pral1010g00005 196 ProSiteProfiles Zinc finger RING-type profile. 106 148 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1010g00005 Pral-Chr1010 33279 35031 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1010g00005 4 158 C3H Transcription Factor Family AT3G10910 57.317 2.30e-57 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1010g00005 K19040 - tcc:18602224 240.736