Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1006g00008 ATGAAGATAGCAATGGAACGGAATTTCACAAAGGGACGAAAATCAGAGCAAGTACAGGCTGCTTGTCTCTACATTGCATTCCGTGCAGAAGATAAGCCATACCTTCTCATTGATTTTTCAAATTATTTAAGGACAAATGTCTATGTTCTAGGTGCAGTTTTTTTACAGCTTTGTAAAGTATTGAGGCTTGAAGAGCACCCAATTGTTCAAAAACCCGTTGATCCTAGTCTTTTTATTTTTAAATATACAAGGAATTTATTAAATCAAAGGAATATCATCGTCACTGAAACTGCACTGAGCATTATTGCAAGCATGAAACGTGATTGGATGCAGACAGGGAGGAAGCCTAGTGGTTTATGTGGTGCGGCATTGTATATAGCTGCCCTTGCACATGGTTTTAAATACTCAAAGTCTGACATCCTAAGAATTGTCCATGTATGTGAAGCAACATTGACCAAGCGTTTGGTTGAGTTTGAGAATACAACCTCTGCTAGCTTGACAGTTGGGGAATTGAAGATGATGGCAAAAGAACGTGAAAAAATTCCTATAGAGAAACCAAATTGTGGATCAGAGGAACATGTCTCAAAGGATCTACTGTGTGAACACAAGGATAGTGGTGTCCCACATTGGGCCCACGGATTATGTGAAAGATGTTATGAGGATTTTGTTAAACTCTCTGGTGGACTTGATGGCGGTTTGGATCCTCCTGCATTCCAGCGTGCTGAGAGGGACAGAATGACAAAATCACCTTGTGAGGAAAGTGGCACCCAATCAAGTGATTTGGCAAAAGCATCAAATGGTATGTGTGCAGGCAGGAAAGAAGATTTGTCTGCTCCTGGGCCAGAAAGTGTTGTAGCGGATGTTGAGGAAATGGCTACTAAAGATGGCGGAAATGATGAATCAAATGGAGAAGATATGAGTGCTAAAACTCCCAGTGAATCAGAAAGTCTCTCAGATATTGATGATTTGGAGGTTGAAGGCTACCTTCACAATGAGGAGGAGAAGCATTACAAGACGCTTATATGGAGTGAAATGAATAGGGAGTATCTTGAGGAGCAAGCAGCCAAGGAGGAAGCAGCAGCTGCTGCTAAGGAAGCTTTCGAGGCAAATTTTCACTGTTCGGAGGATATGCTAGCAGCGAAAGAGCTTGCTGAATCTGCTGCTGCAGCTGTGGCCAAATCCAGAAAGGAAAAGAAGCAGAGACGAGCCCAGGAGGCAAAAAACTCAGGTCCTGCTCAATCTGCTGCTGAGGCTACTCGGAAAATGTTGATAAATAAGAGGCTCAGCTCCAAAGTCAATCTTGATCGCTTGGATAATTTATTTGATGATATTGAGGCGTCAGTGAACAAGAAGGTACGATTTGAGCTGCACTCCCATAAAGGTGGTAAACTAGAGCCTGAGCCAGAGGACAAAGACAAAGGTGATGATATGGGATCCGTTGATAAATTTGAGTATGGAGGTTATATGGGCAAGGAAAATAATTTGCAGGAAGAAAAACTGGCGGAGTATGATTGTGGAGATGATGATTATAGCTATGATGATGATGACTAA 1551 0.4204 MKIAMERNFTKGRKSEQVQAACLYIAFRAEDKPYLLIDFSNYLRTNVYVLGAVFLQLCKVLRLEEHPIVQKPVDPSLFIFKYTRNLLNQRNIIVTETALSIIASMKRDWMQTGRKPSGLCGAALYIAALAHGFKYSKSDILRIVHVCEATLTKRLVEFENTTSASLTVGELKMMAKEREKIPIEKPNCGSEEHVSKDLLCEHKDSGVPHWAHGLCERCYEDFVKLSGGLDGGLDPPAFQRAERDRMTKSPCEESGTQSSDLAKASNGMCAGRKEDLSAPGPESVVADVEEMATKDGGNDESNGEDMSAKTPSESESLSDIDDLEVEGYLHNEEEKHYKTLIWSEMNREYLEEQAAKEEAAAAAKEAFEANFHCSEDMLAAKELAESAAAAVAKSRKEKKQRRAQEAKNSGPAQSAAEATRKMLINKRLSSKVNLDRLDNLFDDIEASVNKKVRFELHSHKGGKLEPEPEDKDKGDDMGSVDKFEYGGYMGKENNLQEEKLAEYDCGDDDYSYDDDD 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1006g00008 516 Pfam Transcription factor TFIIB repeat 2 58 IPR013150 GO:0017025
Pral1006g00008 516 Pfam Transcription factor TFIIB repeat 71 160 IPR013150 GO:0017025
Pral1006g00008 516 MobiDBLite consensus disorder prediction 391 405 - -
Pral1006g00008 516 Coils Coil 346 366 - -
Pral1006g00008 516 CDD CYCLIN_TFIIIB90_rpt2 71 161 - -
Pral1006g00008 516 Gene3D - 1 66 - -
Pral1006g00008 516 SUPERFAMILY Cyclin-like 73 165 IPR036915 -
Pral1006g00008 516 FunFam Transcription factor IIIB subunit 74 163 - -
Pral1006g00008 516 MobiDBLite consensus disorder prediction 502 516 - -
Pral1006g00008 516 MobiDBLite consensus disorder prediction 455 480 - -
Pral1006g00008 516 Coils Coil 389 409 - -
Pral1006g00008 516 MobiDBLite consensus disorder prediction 455 516 - -
Pral1006g00008 516 SUPERFAMILY Cyclin-like 2 64 IPR036915 -
Pral1006g00008 516 Gene3D - 74 168 - -
Pral1006g00008 516 Gene3D Single helix bin 309 360 - -
Pral1006g00008 516 PANTHER TRANSCRIPTION INITIATION FACTOR IIB-RELATED 2 432 IPR000812 GO:0006352|GO:0070897
Pral1006g00008 516 MobiDBLite consensus disorder prediction 233 263 - -
Pral1006g00008 516 Pfam Brf1-like TBP-binding domain 318 442 IPR011665 -
Pral1006g00008 516 MobiDBLite consensus disorder prediction 293 318 - -
Pral1006g00008 516 MobiDBLite consensus disorder prediction 388 418 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1006g00008 Pral-Chr1006 38609 53399 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1006g00008 4 423 Inorganic Solute Cotransporters AT2G01280 43.396 1.98e-91 286
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1006g00008 K15196 - gmx:100817609 541.576