Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1006g00003 ATGAAGATATCATCGGTTGTTGTCTGCATCCTGGTGCTGGTTCTTCCCATGGCATTCGCCAAGCTCAAGCTCGGATTCTATGACTCCTCCTGCCCTAATGCAGAGTCCATCGTGAAGCAAGCCGTGCAGAGGCGATTCAACGACGACAAGACCATCACTGCGGCCTTGCTTCGCATGCACTTTCACGACTGTTTCGTCCGAGGTTGCGATGCATCGTTACTGATAAACTCCACTGACGCCGAGAAAGACGCTGGTCAAAACGCAAGCGTACGGGGATTTGATTTCATCGACGAGGTGAAGGAAAGGCTTGAAGCAGCGTGCCCTTCCACGGTGTCGTGTGTTGATATCATAACACTAGCCACCAGAGACGCCGTGGCTCTGGCCGGAGGACCCAAATATGAGGTTCCCACCGGGCGACGCGACGGGCTTGTCTCTAGAAGCAGCGAGGTTGATTTGCCAGGACCTGGCATCTCAGTGCAGAATGCCTTGAATTTCTTTGCCAGGAAGGGAATCGGACGACAAGACATGGTGAGCCTTATGGGTGGACACACGGTGGGAAAGGCGTTTGGTAGATTTTTGGACGCCAAGACGCCCTTCGCAGTGGATAACCAGTACTATAAGCAAATTCTTCAAAAAAATGGCGTTCTGTCTATTGATCAAAACCTTGCTGTCTCTACGTCAACAAAGAGTATTGTTACTGCCCTTGCATCTGACACTGCTCAGTTTCAGCAAAGCTTCGCTGATGCAATGGTCAAGATGGGTAGAATTCAAGTTCTGGTTGGTAATGCAGGAGAAATCCGTAAGAAATGCAGTGCTTTTAACAATTAA 828 0.4988 MKISSVVVCILVLVLPMAFAKLKLGFYDSSCPNAESIVKQAVQRRFNDDKTITAALLRMHFHDCFVRGCDASLLINSTDAEKDAGQNASVRGFDFIDEVKERLEAACPSTVSCVDIITLATRDAVALAGGPKYEVPTGRRDGLVSRSSEVDLPGPGISVQNALNFFARKGIGRQDMVSLMGGHTVGKAFGRFLDAKTPFAVDNQYYKQILQKNGVLSIDQNLAVSTSTKSIVTALASDTAQFQQSFADAMVKMGRIQVLVGNAGEIRKKCSAFNN 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1006g00003 275 PRINTS Haem peroxidase superfamily signature 111 128 IPR002016 GO:0004601|GO:0006979|GO:0020037
Pral1006g00003 275 PRINTS Haem peroxidase superfamily signature 129 141 IPR002016 GO:0004601|GO:0006979|GO:0020037
Pral1006g00003 275 PRINTS Haem peroxidase superfamily signature 194 209 IPR002016 GO:0004601|GO:0006979|GO:0020037
Pral1006g00003 275 PRINTS Haem peroxidase superfamily signature 53 67 IPR002016 GO:0004601|GO:0006979|GO:0020037
Pral1006g00003 275 PRINTS Haem peroxidase superfamily signature 175 190 IPR002016 GO:0004601|GO:0006979|GO:0020037
Pral1006g00003 275 Gene3D - 25 152 - -
Pral1006g00003 275 SUPERFAMILY Heme-dependent peroxidases 22 274 IPR010255 GO:0004601|GO:0006979|GO:0020037
Pral1006g00003 275 ProSiteProfiles Plant heme peroxidase family profile. 21 274 IPR002016 GO:0004601|GO:0006979|GO:0020037
Pral1006g00003 275 ProSitePatterns Peroxidases proximal heme-ligand signature. 175 185 IPR019793 -
Pral1006g00003 275 Pfam Peroxidase 38 238 IPR002016 GO:0004601|GO:0006979|GO:0020037
Pral1006g00003 275 Gene3D - 254 274 - -
Pral1006g00003 275 Gene3D Peroxidase, domain 2 153 188 - -
Pral1006g00003 275 PRINTS Plant peroxidase signature 174 186 IPR000823 GO:0004601|GO:0006979|GO:0020037
Pral1006g00003 275 PRINTS Plant peroxidase signature 129 144 IPR000823 GO:0004601|GO:0006979|GO:0020037
Pral1006g00003 275 PRINTS Plant peroxidase signature 110 120 IPR000823 GO:0004601|GO:0006979|GO:0020037
Pral1006g00003 275 PRINTS Plant peroxidase signature 91 104 IPR000823 GO:0004601|GO:0006979|GO:0020037
Pral1006g00003 275 PRINTS Plant peroxidase signature 55 75 IPR000823 GO:0004601|GO:0006979|GO:0020037
Pral1006g00003 275 PRINTS Plant peroxidase signature 31 50 IPR000823 GO:0004601|GO:0006979|GO:0020037
Pral1006g00003 275 Gene3D Peroxidase, domain 2 192 253 - -
Pral1006g00003 275 PANTHER - 192 274 IPR000823 GO:0004601|GO:0006979|GO:0020037
Pral1006g00003 275 CDD secretory_peroxidase 21 273 IPR033905 GO:0004601|GO:0042744
Pral1006g00003 275 FunFam Peroxidase 25 169 - -
Pral1006g00003 275 ProSitePatterns Peroxidases active site signature. 53 64 IPR019794 GO:0004601
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1006g00003 Pral-Chr1006 10665 11595 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1006g00003 2 274 Peroxidase AT5G17820 50.968 2.48e-105 308
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1006g00003 K00430 - egr:104443372 331.643