Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1005g00018 ATGGGATTTCACAATTCCAATAATGAATTTGACAACACTGACCACCTCATGCTTACTAGAAAGTCCAGTTCAGGTCGCCAAAAGATCCCAATTGAGAAAATACCAAAGAAAAGGCATCTTCAAGTCACCTTCTCAAAGCGTCATTCTGGACTCTTCAAGAAAGCCAGTGAGCTTTGCACGCTCTGTGGTGTTGAAATCGCCATCATCGTTTTCTCTCCGGCCGACAAGGCCTTCTCCTTCGGCCATCCGGAAGTGGAATCCATCGTCGATCGTTATATCAGTCCAAACCCCACGTCAGAATCCGGCGCTCACCCTCTAGTGGAGGCTCGCCGGAATGCAAACGTCCGGGAGCTCAACATGCAGCTTACACAGCTTCTAGGGCAACTGGAAATGGAGAGGAAGCGAGGAGAAGAACTGGACCAGGTGAGGAAGGCGAGGCAGAGACAGTTCTGGTGGGAAAACCCTATTCAAGAATTAGGGTCTAATGAGTCCCCGTTTTGA 501 0.493 MGFHNSNNEFDNTDHLMLTRKSSSGRQKIPIEKIPKKRHLQVTFSKRHSGLFKKASELCTLCGVEIAIIVFSPADKAFSFGHPEVESIVDRYISPNPTSESGAHPLVEARRNANVRELNMQLTQLLGQLEMERKRGEELDQVRKARQRQFWWENPIQELGSNESPF 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1005g00018 166 PANTHER MADS BOX PROTEIN 26 160 - -
Pral1005g00018 166 Coils Coil 112 135 - -
Pral1005g00018 166 Gene3D - 36 103 IPR036879 GO:0003677|GO:0046983
Pral1005g00018 166 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 33 80 IPR002100 GO:0003677|GO:0046983
Pral1005g00018 166 PRINTS MADS domain signature 46 61 IPR002100 GO:0003677|GO:0046983
Pral1005g00018 166 PRINTS MADS domain signature 61 82 IPR002100 GO:0003677|GO:0046983
Pral1005g00018 166 PRINTS MADS domain signature 26 46 IPR002100 GO:0003677|GO:0046983
Pral1005g00018 166 SMART madsneu2 24 83 IPR002100 GO:0003677|GO:0046983
Pral1005g00018 166 SUPERFAMILY SRF-like 25 99 IPR036879 GO:0003677|GO:0046983
Pral1005g00018 166 Gene3D - 104 165 - -
Pral1005g00018 166 ProSiteProfiles MADS-box domain profile. 24 84 IPR002100 GO:0003677|GO:0046983
Pral1005g00018 166 CDD MADS_MEF2_like 25 96 IPR033896 GO:0000977|GO:0045944
Pral1005g00018 166 FunFam Agamous-like MADS-box protein AGL62 36 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1005g00018 Pral-Chr1005 96497 100435 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1005g00018 21 160 Type I MADS-box Gene Family AT5G60440 55.245 1.54e-49 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pral1005g00018 SRF-TF 7.6e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1005g00018 - - ccaj:109813387 239.195