Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1005g00011 ATGGCAGACCCAATTCCACCGAAGAAGACGAAGGGGCAGCAAAAGATCGAAGTCAAAGCGATGGAAGACGCTAAAAAGCGCAGTGTCACCTTCACAAAACGTAGAGCTGGCCTTTTTAAGAAGGCAGACCAGCTCTGTGCTCTCATCAGCGCCGAGGTGGCTCTCATGGTGATCTCTCCGGGAGGCAAGCCGTTCACGTTCGGCAGCCCCGACGTCGACGCCGTGATAGCGAGGTACAAGAGCCAAGTGCCACAGTCGCCGACGGTGGATCAACAGAAAGCTGAGCTTAAGGAAATCATGGAACAGTTGGCGTACGAGGATAAGCGAGCAGAGGAACTGAAGCAAAGAAGGAGAGAAATGCATAACGAAACGTGGATGGCTGCGCCATGTCAAACTCATTCTAAGGCTCAGCAAAAGATCATGAAGGAGCGACTAACGCAGTTGTGTAAAATATTCTCTCAACCTCCAGGCTTCCATAACTTTCTTGGGCTGTTCTCCGAATCGCCTCCGGATTCGACCTTTGAGTTCCCAACTTGTTCTCTTACTGCGTTATTGACTCAGAATCCGGAGCTCCAAGAAAGTCTGAGGCTTTCATTTCGGCTCAGTGGAAATCAGAATTTTGGAGGTAACGTGATACCTACACCGCCTCGTAACTTCTACACCGGTGAATCGTCATCGTCTGCGATGGCGGCAGTGACTCAGAATCATATCTTTGAGAATAATATGATGATGAACAATCATGACAACTTCTCCACGGAAGAATCGTCGTCAATGGTGCCGGCGGGGACTCAGAATCATATGTTTGATAATAGCATGATACTTACACCCCCTGGTAACTTTTACCCAGGCAAATCGTCATCGTCGGCGCCGGCGGGGGCTCAAAATCATATGCTTAACGACAACATGATGCTGAACAATGATGACAACTTCTACACAGGCGAATCATCGTTAGTGGTGCCGGCAAGGACTCAGAATCATATGGCTGATTACAACATGATACTGAGCAGCCATGCCAACTTCTTCACAGGCGAATCGTCATCAATGGTGCCGGCGGAGACTCAGAGTCATATGTTTGAGGGTAGCATGATACTGAACAGCCACGGCAACTTCTCCACAGGCGAATCGTCGTCAATGGTGCTGGCAGAGACTCAGAATGATATGTTTGAGGGTAGCAAGATACAGAACAGCCATGACAACTTCTTCGCAGGTGAATCTTCGTCAATGCTGCCGCCGGGGACTCAACAGAGTCATATGTTCGGGGATAATATGATGCTGAACAACAGTGACAACTTCAACACATGTGTATCCTCGTCAATGGCATCAGAAAATCAGAGCATAATGTTTGATGATGACATGATGTTGGCAGTTTATGGTAACTTCTTTACAAGTGGATCCTTGACAGAAGAACTGGCTTTGAATCAATTTATTGATGAAAACATTATGAATCCTCCACTGGATAACTCCAATACATATCAGTCCTTGACGGCCTTGCCACCGGCTGGTGGGAATCAAACATCTGATGAAAACATTATGGTTCCTCCGCATGATAATTACCACACGTATGAATCTACGGTGGTGCCGGCGGCATCTGATGATGAGAGTCTGCTTTTCGACGAAAACTTGAGGTTCTTTCTGGGTGATGAATTCTTCGCAAGCAGTTACTCTATGGTGCCGCCGGAGCAACGTCAAACGTTTAATGAAAATGTGATGCCTCCGCCGCCGCAGCCTCCGCCTTGTGATGAATATGGTCCTGGATCTTCAGGGTTCAACTGA 1773 0.4783 MADPIPPKKTKGQQKIEVKAMEDAKKRSVTFTKRRAGLFKKADQLCALISAEVALMVISPGGKPFTFGSPDVDAVIARYKSQVPQSPTVDQQKAELKEIMEQLAYEDKRAEELKQRRREMHNETWMAAPCQTHSKAQQKIMKERLTQLCKIFSQPPGFHNFLGLFSESPPDSTFEFPTCSLTALLTQNPELQESLRLSFRLSGNQNFGGNVIPTPPRNFYTGESSSSAMAAVTQNHIFENNMMMNNHDNFSTEESSSMVPAGTQNHMFDNSMILTPPGNFYPGKSSSSAPAGAQNHMLNDNMMLNNDDNFYTGESSLVVPARTQNHMADYNMILSSHANFFTGESSSMVPAETQSHMFEGSMILNSHGNFSTGESSSMVLAETQNDMFEGSKIQNSHDNFFAGESSSMLPPGTQQSHMFGDNMMLNNSDNFNTCVSSSMASENQSIMFDDDMMLAVYGNFFTSGSLTEELALNQFIDENIMNPPLDNSNTYQSLTALPPAGGNQTSDENIMVPPHDNYHTYESTVVPAASDDESLLFDENLRFFLGDEFFASSYSMVPPEQRQTFNENVMPPPPQPPPCDEYGPGSSGFN 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1005g00011 590 SMART madsneu2 11 70 IPR002100 GO:0003677|GO:0046983
Pral1005g00011 590 Coils Coil 96 123 - -
Pral1005g00011 590 MobiDBLite consensus disorder prediction 564 590 - -
Pral1005g00011 590 Gene3D - 24 93 IPR036879 GO:0003677|GO:0046983
Pral1005g00011 590 PANTHER MADS BOX PROTEIN 14 148 - -
Pral1005g00011 590 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 21 67 IPR002100 GO:0003677|GO:0046983
Pral1005g00011 590 PRINTS MADS domain signature 13 33 IPR002100 GO:0003677|GO:0046983
Pral1005g00011 590 PRINTS MADS domain signature 33 48 IPR002100 GO:0003677|GO:0046983
Pral1005g00011 590 PRINTS MADS domain signature 48 69 IPR002100 GO:0003677|GO:0046983
Pral1005g00011 590 SUPERFAMILY SRF-like 12 89 IPR036879 GO:0003677|GO:0046983
Pral1005g00011 590 ProSiteProfiles MADS-box domain profile. 11 71 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1005g00011 Pral-Chr1005 62612 64384 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1005g00011 8 153 Type I MADS-box Gene Family AT5G60440 37.654 2.75e-26 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pral1005g00011 SRF-TF 2.7e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1005g00011 - - pcin:129293116 532.717