Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1004g00001 ATGGACTCTAGCAACTGTCATGTTGAATGCAAAAGGCCAAGCCCTTCTTCTCCTTCACCCATTACTGAAGAGCCTAAAGAACAGAAGAGGATAATAGTAGTGAGTTACCAGGAATGCCTCAAGAACCATGCAGCTTCAATAGGCGGGCATGCAATTGATGGGTGTGGTGAGTTCCTTTCTTCAGAAGAAGAAGGCTCACTTGAGGCTTTCAAGTGCTCAGCCTGCGGTTGCCACAGAAACTTCCACAGAAAGGAGATCCAATACTGTTATTCAAATTCCTCCTCCAATACTTTCTTTTATAGCTCTGATCAGCATTATCTCACCCCATCGCTTCCAAACTCCTCTCAGATCACCAACCCCATCTTTCTGGATCATCTTCTATTATCTCCCAACAAAACTGGCTCAAATCTTTCTGATCAGTCACATGATCATGACAGTAGTAAAGATCCCGGGGAAGAAGATCATAGGAATCATTATAAAGAGGTTGGGAAACCAGAAGATGAGAAGGTGATGATGAAGAAAAGGTTTAGGACTAAGTTCAGTGCAGAACAGAAGGAGAAGATGGTGAAATTTGCAGAGAAGGTAGGGTGGAAAACGCAGAAGATTGAAGAATCTGTGGTGCAGCAGTTTTGTGAAGAGATAGGAATCAAGAGGAGAGTCCTCAGAGTGTGGATGCACAACAACAAGAATACTTATGCAAAAAACTTGTGCTCCACTGGCTAG 723 0.4329 MDSSNCHVECKRPSPSSPSPITEEPKEQKRIIVVSYQECLKNHAASIGGHAIDGCGEFLSSEEEGSLEAFKCSACGCHRNFHRKEIQYCYSNSSSNTFFYSSDQHYLTPSLPNSSQITNPIFLDHLLLSPNKTGSNLSDQSHDHDSSKDPGEEDHRNHYKEVGKPEDEKVMMKKRFRTKFSAEQKEKMVKFAEKVGWKTQKIEESVVQQFCEEIGIKRRVLRVWMHNNKNTYAKNLCSTG 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1004g00001 240 Gene3D - 159 235 - -
Pral1004g00001 240 FunFam Zinc-finger homeodomain protein 2 161 234 - -
Pral1004g00001 240 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 36 86 IPR006456 -
Pral1004g00001 240 MobiDBLite consensus disorder prediction 1 26 - -
Pral1004g00001 240 MobiDBLite consensus disorder prediction 133 166 - -
Pral1004g00001 240 MobiDBLite consensus disorder prediction 1 17 - -
Pral1004g00001 240 MobiDBLite consensus disorder prediction 138 166 - -
Pral1004g00001 240 Pfam ZF-HD protein dimerisation region 34 86 IPR006456 -
Pral1004g00001 240 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 36 85 IPR006456 -
Pral1004g00001 240 NCBIfam homeobox domain, ZF-HD class 173 230 IPR006455 -
Pral1004g00001 240 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 16 231 - -
Pral1004g00001 240 SUPERFAMILY Homeodomain-like 163 234 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1004g00001 Pral-Chr1004 3526 4353 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1004g00001 32 234 ZF-HD Transcription Factor Family AT2G02540 46.154 4.95e-57 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Pral1004g00001 ZF-HD_dimer 1.4e-28 No_clan