Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1000g00012 ATGGCAAACCCTAAGGTCTTCTTCGACATAACCATCGGTGATCAGCCCGCCGGTCGCGTAGTCATGGAGCTCTTCGCGGATACCACCCCAAAGACGGCCGAGAACTTCCGTGCCCTCTGCACCGGCGAGAAGGGTGTGGGCCGCAGCGGCAAGCCCCTTCACTACAAGGGCTCCGTCTTGCACCGTGTGATCCCGGACTTCATGTGCCAGGGCGGCGACTTCACGGCCGGGAACGGCACCGGCGGCGAGTCGATTTACGGCGCCAAGTTCGAGGACGAGAACTTCGTGAAGAAGCACACGGGCCCCGGAGTCCTGTCCATGGCCAATGCCGGACCCGGAACCAACGGGTCGCAGTTCTTCATCTGCACGGCCCAAACGTCGTGGCTGGACGGCAAGCACGTGGTGTTCGGTCAGGTGGTGGAAGGCATGGACGTGGTGAGGGAGATCGAGAAGGTGGGGTCAAGGTCTGGGAAGACCTCAAAGCCAGTGGTGATTGCCGAGTGCGGTCAACTCTCTTAG 519 0.6166 MANPKVFFDITIGDQPAGRVVMELFADTTPKTAENFRALCTGEKGVGRSGKPLHYKGSVLHRVIPDFMCQGGDFTAGNGTGGESIYGAKFEDENFVKKHTGPGVLSMANAGPGTNGSQFFICTAQTSWLDGKHVVFGQVVEGMDVVREIEKVGSRSGKTSKPVVIAECGQLS 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1000g00012 172 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 131 146 IPR002130 GO:0000413|GO:0003755
Pral1000g00012 172 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 103 118 IPR002130 GO:0000413|GO:0003755
Pral1000g00012 172 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 60 72 IPR002130 GO:0000413|GO:0003755
Pral1000g00012 172 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 24 39 IPR002130 GO:0000413|GO:0003755
Pral1000g00012 172 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 118 130 IPR002130 GO:0000413|GO:0003755
Pral1000g00012 172 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 7 170 IPR002130 GO:0000413|GO:0003755
Pral1000g00012 172 FunFam Peptidyl-prolyl cis-trans isomerase 1 172 - -
Pral1000g00012 172 Gene3D - 1 172 IPR029000 -
Pral1000g00012 172 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 7 169 IPR002130 GO:0000413|GO:0003755
Pral1000g00012 172 SUPERFAMILY Cyclophilin-like 2 171 IPR029000 -
Pral1000g00012 172 CDD cyclophilin_ABH_like 4 169 - -
Pral1000g00012 172 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 5 171 - -
Pral1000g00012 172 PIRSF Peptidylpro_ismrse 1 172 IPR024936 GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1000g00012 Pral-Chr1000 65271 66046 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1000g00012 3 152 U-box Gene Family AT5G67530 45.806 5.31e-29 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1000g00012 K01802 - pvy:116118183 320.857