Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1000g00006 ATGGGTGAGAGGGTGACTGGGAAGGTGAAGTGGTTCAGTGACCAGAAGGGTTTCGGCTTCATCACCCCGGATGATGGCGGCGAGGACCTCTTTGTCCACCAATCTGCGATCCGGTCCGATGGGTTTCGCAGTCTTGGCGACGGAGAGTCTGTCGAGTTTCTGATCGAGTCCGACTCCGATGGCCGTACCAAGGCCGTCGACGTCACCGGCCCCTCCGAGTCTAATGTTCAGGGGAGCCGACGCGGTGGAGGCGGTGCTGGGGGGAACAGATCCTTCGGAGGCGGCCGAGGCGGTTCTTATGGCGGTGGCTACGGGGCTGGTGGAGGTTATGGTGGCAGTCGCGGTGGAAGAGGCGGGGGTGGTGGTGGTTATGGCGGTGGATTCGGCGGCGGTGGCGGCGGAGGGGGTTGTTATAACTGCGGTGAGGTTGGTCACCTGGCCAGGGATTGCTACCAGGGAGGCGGCGGCGGCGGAGGAGGAGGTAGGTACGGCGGCGGAGGCGGCGGAGGCTGCTACAACTGTGGGGAGTCTGGGCATTTTGCCAGGGACTGCCCAACCGGCGCTCGCTGA 570 0.6456 MGERVTGKVKWFSDQKGFGFITPDDGGEDLFVHQSAIRSDGFRSLGDGESVEFLIESDSDGRTKAVDVTGPSESNVQGSRRGGGGAGGNRSFGGGRGGSYGGGYGAGGGYGGSRGGRGGGGGGYGGGFGGGGGGGGCYNCGEVGHLARDCYQGGGGGGGGGRYGGGGGGGCYNCGESGHFARDCPTGAR 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1000g00006 189 ProSitePatterns Cold-shock (CSD) domain signature. 18 37 IPR019844 -
Pral1000g00006 189 Pfam 'Cold-shock' DNA-binding domain 6 70 IPR002059 GO:0003676
Pral1000g00006 189 ProSiteProfiles Zinc finger CCHC-type profile. 137 150 IPR001878 GO:0003676|GO:0008270
Pral1000g00006 189 Gene3D - 2 82 IPR012340 -
Pral1000g00006 189 ProSiteProfiles Zinc finger CCHC-type profile. 171 185 IPR001878 GO:0003676|GO:0008270
Pral1000g00006 189 SUPERFAMILY Retrovirus zinc finger-like domains 126 187 IPR036875 GO:0003676|GO:0008270
Pral1000g00006 189 ProSiteProfiles Cold-shock (CSD) domain profile. 4 70 IPR002059 GO:0003676
Pral1000g00006 189 SMART c2hcfinal6 170 186 IPR001878 GO:0003676|GO:0008270
Pral1000g00006 189 SMART c2hcfinal6 136 152 IPR001878 GO:0003676|GO:0008270
Pral1000g00006 189 PANTHER COLD SHOCK DOMAIN PROTEIN 2 3 186 - -
Pral1000g00006 189 SUPERFAMILY Nucleic acid-binding proteins 3 70 IPR012340 -
Pral1000g00006 189 CDD CSP_CDS 5 70 IPR002059 GO:0003676
Pral1000g00006 189 PRINTS Cold shock protein signature 7 22 IPR002059 GO:0003676
Pral1000g00006 189 PRINTS Cold shock protein signature 28 37 IPR002059 GO:0003676
Pral1000g00006 189 PRINTS Cold shock protein signature 43 61 IPR002059 GO:0003676
Pral1000g00006 189 SMART csp_8 6 71 IPR011129 GO:0003676
Pral1000g00006 189 Pfam Zinc knuckle 170 185 IPR001878 GO:0003676|GO:0008270
Pral1000g00006 189 Pfam Zinc knuckle 136 150 IPR001878 GO:0003676|GO:0008270
Pral1000g00006 189 Gene3D - 167 189 - -
Pral1000g00006 189 Gene3D - 133 158 - -
Pral1000g00006 189 MobiDBLite consensus disorder prediction 59 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1000g00006 Pral-Chr1000 30896 31870 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Pral1000g00006 CSD 3.2e-26 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1000g00006 - - zju:107427522 175.252