Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g02262 ATGGCTTCTTTAACTTTTCTTTATTCCTATTTTATTCTGCTAATTATTCTCCTTCTTCTCTCATCTTTGTTCAGTGCTACATCTTCAAACTGTGGTGATTCTAGTGTGCACTTAAACTCTTCTCTAAAAACCAATGATTCAATTCCATGGAATTCACCTTCTGGCCATTTTGCCTTTGGTTTCCAAACAGTTCTATACGACAACAATGAGTTCATGTCCGTGCTTGCAGTTTGGTTTGCCAAGGACCCGAATAAAACCATGGTATGGTATGCAAAGCCAAAAAACCAATTTCATCTTTTTCCATTAGGGTCAACTATGAATCTCACAGACAAAGGAATTGTAGTGTATGATCCAAAGGGTCATGACATGTTGTGGCACCGTCCAGAAAACAACACTGCTGCTTTGGTATCGTGTGCTTCTATGCTAGACAATGGAAGTTTTGTGCTTGTGGATGAGGGTGGGAAGAAGGTTTGGGAGAGCTTTGAGGAGCCCACAGATACTATTTTGCCTGGTCAGAATTTGTCTAGGCCTAAAAGCTTCAGAGCACGCCAATCTGAGACGAGTTTTGATGATGGGAGTTTTCAACTCAGTTGGCAGAGTGATGGCAATTTGGTTCTTTACTATTCTCCAAAATCAAGCACAGATGACAATGAAAGCTCTCAGTCTGCAACACAAGAGCCTTACTGGTCCACTGGAACTTTCAAAACTGAATCACAGCTTTTCTTCGATGAGTCTGGACACATGTACATAGAAAATGACACGGGCACTGTGATCAGTGAAATCACATCTGGTGGATCTGATGAGTTCTTTTACATGGCTAGAATTGACCCTGATGGGGTTTTCAGACTATATCGGCACCCAAAAGGTGACCACACAACTGTTGCTAATAGCTGCAGTTCGAGGTGGTGGAGTGTGGAGGAAAAGCATCCAGAAGATATTTGCATTTCCTTCACGAAGCAAACTGGGAATGTTATCTGCGGTTTTAACAGCTACTGTGTTACCATTGAGGACAAGACTAATTGTAAGTGCCCAGATCATTATTCTCCTTTCGAACATGACAATCTCACAGGTTGTAGACCAGATTTTCCACTGCCTAGTTGCAACAAAGACGGGTGGGAGCAGAATAAGGATCTTGTAGATTTCAAAGAGTATAGTAATTTGGACTGGCCTCTCTCAGATTATGACAGGTTGCTTGGAACAGAAATGAACAAGGATACGTGTAGAAAAAAGTGCCTTGAAGATTGCTTTTGTGCTGTGGCCATATATGGTGGGGGAAGCTGTTGGAAGAAGAAGTATCCTTTGAGCAATGGAAGGATGCACCATAATGTGACTAGAATAGCTCTTGTCAAGGTGCCTAAAACAGATTTAAACAATGGTGAAAAAGAACAGACCACACTTGTGCTTGTCGTATCAATACTCCTTGGAAGCTCAGTTTTAGTCAATGTTCTTCTACTTGTTGCTTTGTTTGCTGCTTTTTTCATTTTCTACCACAAGAGGCTTTTGAATAGTCCGAACTTGTCAGTTGGTACAGTAAGCCACTTCACATACAAGGAGCTTGAAGAAGCAACCACAGGGTTCAAACAAATGTTGGGTCGAGGTGCTTTTGGAACAGTTTATAAAGGGGTGTTGACATCAAACACAAGCAGGTATGTTGCTGTGAAGAGGCTAGACAAGATTGTGCAAGAAGGTGAGAAAGAGTTCAAAACAGAAGTGAGTGTGATTGGACAAACCCACCACAGGAACTTGGTTCGTCTGTTTGGTTATTGTGATGAAGGGGAGCATCGTCTTTTGGTGTATGAATACATGAGCAATGGTTCATTGGCTGGTTTTCTCTTTGGGATCTCAAGGCCTCATTGGAACCAAAGAGTGCAAATTGCTTTGGGGATTGCAAGAGGGCTCACATATTTGCATGAAGAATGCAGCACTCAGATAATTCACTGTGACATAAAGCCTCAGAACATACTCTTAGATGACTTGTTCACTCCTAGGATTGCTGATTTTGGGTTGGCAAAGTTGTTGTTGGTTGAGCAAACTAAAGCTGCTAGGACTGGTTTGAGAGGAACAATTGGTTACTTTGCACCTGAATGGTTTAGAAAAGCTTCAATCACAACTAAAGTAGATGTTTACAGCTTTGGAGTGGTGCTGTTAGAGATCCTATGTTGCAAGTCAAGTGTTGCCTTTGCACTTGAAAGTGAAGAAGAGGCACTCATAGATTGGGCTTATCGTTGTTATAGCCTAGGAAAGGTGGCTAAATTGGTAGAAAATGATGAGGAGGCAAAGAATGATATAAAGAGGGTGGAGAATCATGTGATGGTAGCAATTTGGTGCATTCAAGAGGATCCTTCACTCAGACCCTCCATGAAAAAGGTTACACAAATGCTTGAGGGTGTTACGACAGTTTCTGTGCCACCTTGCCCTTCTATCTTCACTTCATCACCCTTTTAA 2445 0.4176 MASLTFLYSYFILLIILLLLSSLFSATSSNCGDSSVHLNSSLKTNDSIPWNSPSGHFAFGFQTVLYDNNEFMSVLAVWFAKDPNKTMVWYAKPKNQFHLFPLGSTMNLTDKGIVVYDPKGHDMLWHRPENNTAALVSCASMLDNGSFVLVDEGGKKVWESFEEPTDTILPGQNLSRPKSFRARQSETSFDDGSFQLSWQSDGNLVLYYSPKSSTDDNESSQSATQEPYWSTGTFKTESQLFFDESGHMYIENDTGTVISEITSGGSDEFFYMARIDPDGVFRLYRHPKGDHTTVANSCSSRWWSVEEKHPEDICISFTKQTGNVICGFNSYCVTIEDKTNCKCPDHYSPFEHDNLTGCRPDFPLPSCNKDGWEQNKDLVDFKEYSNLDWPLSDYDRLLGTEMNKDTCRKKCLEDCFCAVAIYGGGSCWKKKYPLSNGRMHHNVTRIALVKVPKTDLNNGEKEQTTLVLVVSILLGSSVLVNVLLLVALFAAFFIFYHKRLLNSPNLSVGTVSHFTYKELEEATTGFKQMLGRGAFGTVYKGVLTSNTSRYVAVKRLDKIVQEGEKEFKTEVSVIGQTHHRNLVRLFGYCDEGEHRLLVYEYMSNGSLAGFLFGISRPHWNQRVQIALGIARGLTYLHEECSTQIIHCDIKPQNILLDDLFTPRIADFGLAKLLLVEQTKAARTGLRGTIGYFAPEWFRKASITTKVDVYSFGVVLLEILCCKSSVAFALESEEEALIDWAYRCYSLGKVAKLVENDEEAKNDIKRVENHVMVAIWCIQEDPSLRPSMKKVTQMLEGVTTVSVPPCPSIFTSSPF 814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g02262 814 SUPERFAMILY Protein kinase-like (PK-like) 506 795 IPR011009 -
Phco9g02262 814 CDD STKc_IRAK 530 796 - -
Phco9g02262 814 ProSiteProfiles Bulb-type lectin domain profile. 33 162 IPR001480 -
Phco9g02262 814 ProSitePatterns Serine/Threonine protein kinases active-site signature. 644 656 IPR008271 GO:0004672|GO:0006468
Phco9g02262 814 ProSiteProfiles Protein kinase domain profile. 524 814 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco9g02262 814 PIRSF SRK 4 813 IPR024171 GO:0004674
Phco9g02262 814 Coils Coil 749 769 - -
Phco9g02262 814 Gene3D - 30 163 IPR036426 -
Phco9g02262 814 SMART serkin_6 524 794 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco9g02262 814 CDD PAN_AP_plant 373 452 - -
Phco9g02262 814 FunFam S-receptor-like serine/threonine-protein kinase 497 601 - -
Phco9g02262 814 Pfam D-mannose binding lectin 86 186 IPR001480 -
Phco9g02262 814 ProSitePatterns Protein kinases ATP-binding region signature. 530 554 IPR017441 GO:0005524
Phco9g02262 814 SUPERFAMILY alpha-D-mannose-specific plant lectins 186 287 IPR036426 -
Phco9g02262 814 Gene3D Transferase(Phosphotransferase) domain 1 602 802 - -
Phco9g02262 814 Pfam Protein kinase domain 527 792 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco9g02262 814 Gene3D - 165 299 IPR036426 -
Phco9g02262 814 SUPERFAMILY alpha-D-mannose-specific plant lectins 74 233 IPR036426 -
Phco9g02262 814 SMART blect_4 33 164 IPR001480 -
Phco9g02262 814 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 602 802 - -
Phco9g02262 814 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 41 806 - -
Phco9g02262 814 Gene3D Phosphorylase Kinase; domain 1 496 601 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g02262 Phco-Chr9 47875411 47878137 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Phco9g02262 Pkinase 1.6e-49 CL0016