Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g02252 ATGGCTCAGTGGCAGGGTGATGCTGATGAGGGTATAGACTACATGTTCAAGATTGTGATGGTTGGGGACTCTGGGGTTGGAAAGTCTCAGCTTCTGAATCGATTTGTGAAGAACGAATTCCTCATGAAATCGAAACCCACAATTGGGGTGGAGTTTCTGACTAGGACGGTTGTCATGGACCACAAGCTTGTCAAGGCACAGATTTGGGACACTGCTGGTCAAGAAAGGTACCAGGCAATTACAACTGCATATTATAGGGGTGCAACCGGTGCCTTACTAGCATACGACATAACCAAGCAGCAAACCTTTGATCATGTTGAGAAGTGGTTGGATGAGCTGAGGATACACGCGGATCAAAATATACTTGTAATGCTTGTTGGCAACAAATCTGACCTGAGTTCTCTTCGAGCAGTGCCTGTTGAGGTGGCAAGAGAGTTTGCACAGCAGGAGGGTCTATTCTTTCTGGAGACATCTGCACTTGACTCCAGCAATGTGGAATCAGCCTTCATTGGTCTCCTCTCTCAAGTATATAGAACAGTTAGTAGGAAGCCAATCCTTGTGGATGGACATGAATCAAATTTTGATAAAGTAAACCTTGAACTTGAAGGAACAAAAATTAAGATGCCATTTCAAGAAACTGAATGCCAGAATGCTAAAAAGAGATCCAATTGTTGCAGTATTCTTTAG 687 0.4367 MAQWQGDADEGIDYMFKIVMVGDSGVGKSQLLNRFVKNEFLMKSKPTIGVEFLTRTVVMDHKLVKAQIWDTAGQERYQAITTAYYRGATGALLAYDITKQQTFDHVEKWLDELRIHADQNILVMLVGNKSDLSSLRAVPVEVAREFAQQEGLFFLETSALDSSNVESAFIGLLSQVYRTVSRKPILVDGHESNFDKVNLELEGTKIKMPFQETECQNAKKRSNCCSIL 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g02252 228 PANTHER DRAB11-RELATED 10 225 - -
Phco9g02252 228 SMART rab_sub_5 16 179 - -
Phco9g02252 228 SMART rho_sub_3 18 174 IPR001806 GO:0003924|GO:0005525
Phco9g02252 228 Pfam Ras family 17 177 IPR001806 GO:0003924|GO:0005525
Phco9g02252 228 SMART ran_sub_2 21 216 - -
Phco9g02252 228 SMART ras_sub_4 16 179 - -
Phco9g02252 228 FunFam ras-related protein RABA5a 8 225 - -
Phco9g02252 228 CDD Rab11_like 13 177 - -
Phco9g02252 228 PRINTS Transforming protein P21 ras signature 16 37 - -
Phco9g02252 228 PRINTS Transforming protein P21 ras signature 119 132 - -
Phco9g02252 228 PRINTS Transforming protein P21 ras signature 154 176 - -
Phco9g02252 228 PRINTS Transforming protein P21 ras signature 39 55 - -
Phco9g02252 228 PRINTS Transforming protein P21 ras signature 57 79 - -
Phco9g02252 228 ProSiteProfiles small GTPase Rho family profile. 9 180 - -
Phco9g02252 228 ProSiteProfiles small GTPase Ras family profile. 10 228 IPR001806 GO:0003924|GO:0005525
Phco9g02252 228 Gene3D - 9 225 IPR027417 -
Phco9g02252 228 NCBIfam small GTP-binding protein domain 14 169 IPR005225 GO:0005525
Phco9g02252 228 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 13 186 IPR027417 -
Phco9g02252 228 ProSiteProfiles small GTPase Rab1 family profile. 11 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g02252 Phco-Chr9 47822473 47824056 Dispersed/Wgd