Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g02251 ATGAGCATGGTGTATAGTCATGCAGTGAAGTATTCCCAAGGAGTGACGAGGATGAACCCAGAGATGGATTCAAATATTGGTCAACATTGTCACCAACAAAATTCTGGGCTAATGAGGTACCGTTCTGCCCCAAGCTCATTGCTCACAAGCCTTGTGAACAGCAGCAGAAACATCAATATCAACAACAACATTGGATGTGTCAATGGTGAGACTCAGCAGCAGCAGAATTATCCTCCCTCCACAAGTTCTGAAATGGAGACCATGTTGGCCAAGTTGATTTCTTCCAATGATTCTGAGCCTTTGCAAGAGTTTGAAGGGAAGCCAGTGAAGGAAGAAGCAGGAGACACGGTTCCACAGCCACCACAACAGCACAATGGTTACTCTTTCGGGTCTTCACCTCAGATAATGTACCAAACTCAGCAAGTTCAAGGCTTTCCTATGCCAAATGGTTCTTTAAGGGCTGCAGGGAATGGTTTTGATGGCTCATTCAGTGCAGTGAATTCCATGGCTTCTCAGAATTCCACACAAACCAAAATGGGTGCTTCCACCAATTGCTCCAATCTCATTAGGCAAAAGAGTTCCCCTGCAGGGTTTTTCTCCAATTACTCAGTTGATAATGCACTGAGAGATATGGCTAGTTTTAGGGGCTGTGATGTATCAAATGGACAAGCTATTACATCCACTAGTGGGTTGCATGGTACTTTGAACTTCTCATCAAGGTCATCCTCTTGTTCCACCAGGATGCCACAGATTGCTGAAAATGGAAATGAAGGTGTGGAACCAAATTGTGTTGAAAGTAGAAACCTGCGGAATGACAATGACAACACTAAGTGTTACATGCCTAGTTTCACCACTGACTTCTGGGATGGTTCGGTAATCAGTGCCCCCAGAACAGCTAGAAACAATTGTGAAATATCATTTTCCACTTCAAATGCAATGGATATTCAGGATGCTGATTTTGGATATCAAAAAGTTGGTCTGACCCATCATTTGAGTCTGCCTAGCTCTTCTAGTAGAATGGCTACCATGGAGAAGTTATATCAAACTCAAGGAGTTGTTCCATGCAAAATTCGTGCCAAGAGAGGTTTTGCCACTCACCCAAGAAGCATTGCGGAAAGGGAAAGAAGAACAAGAATTAGTGCAAGAATCAAGAAATTGCAAGACCTTTTCCCAAAATCAGACAAGCAAACAAGCACATCGGATATGTTGGATTTGGCAGTTGAGTACATTAAAGACCTGCAGAAACAAGTTAAGATGCTGGCTGACACTAAGGCAAAGTGCACTTGTACAAGTAATCATACGCAATATTCTAGACCTTGTGCCTGA 1326 0.4306 MSMVYSHAVKYSQGVTRMNPEMDSNIGQHCHQQNSGLMRYRSAPSSLLTSLVNSSRNININNNIGCVNGETQQQQNYPPSTSSEMETMLAKLISSNDSEPLQEFEGKPVKEEAGDTVPQPPQQHNGYSFGSSPQIMYQTQQVQGFPMPNGSLRAAGNGFDGSFSAVNSMASQNSTQTKMGASTNCSNLIRQKSSPAGFFSNYSVDNALRDMASFRGCDVSNGQAITSTSGLHGTLNFSSRSSSCSTRMPQIAENGNEGVEPNCVESRNLRNDNDNTKCYMPSFTTDFWDGSVISAPRTARNNCEISFSTSNAMDIQDADFGYQKVGLTHHLSLPSSSSRMATMEKLYQTQGVVPCKIRAKRGFATHPRSIAERERRTRISARIKKLQDLFPKSDKQTSTSDMLDLAVEYIKDLQKQVKMLADTKAKCTCTSNHTQYSRPCA 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g02251 441 CDD bHLH_AtbHLH_like 368 420 IPR045239 -
Phco9g02251 441 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 363 413 IPR011598 GO:0046983
Phco9g02251 441 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 43 430 - -
Phco9g02251 441 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 366 427 IPR036638 GO:0046983
Phco9g02251 441 SMART finulus 369 419 IPR011598 GO:0046983
Phco9g02251 441 Gene3D - 365 435 IPR036638 GO:0046983
Phco9g02251 441 MobiDBLite consensus disorder prediction 97 131 - -
Phco9g02251 441 Pfam Helix-loop-helix DNA-binding domain 369 414 IPR011598 GO:0046983
Phco9g02251 441 FunFam Transcription factor bHLH130 family 364 433 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g02251 Phco-Chr9 47817049 47819821 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phco9g02251 HLH 3.5e-10 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco10g00367 10 3319920 3322565 Phco9g02251 9 47817049 47819821 ECH
Phco9g02251 9 47817049 47819821 Phco9g02251 9 47817049 47819821 ECH