Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g02241 ATGCCGACTACCCTCCAAAATCATGTGCATCTTAGTCCTCCACTTGTTCAAATCATGTATACATTTGCTACTCCAAATTTCTCAAAGTTAACCACATGTCTGACATCATTCACTATGACAGATCCTAAGTCCAATTTGTTCCATGAATGGTTCAACTTCATGCTCCTCCACCCTCCATACCCTTCTTCTTCTTCTTCTCAATCCTACCCTCTTGCCAATTACTCAAACAACAGGTTTGGAATTCAATTACAAGGAGCCTCATCTTCATATTCATATTCATACGCAGCTCCTCCTCCTCCTCCTCCTTCATCCCCTCCTCTCAGAGAGGCCCTTCCTCTCATCAACAAGATAAGCCTAACAAGTGAGCAGGTCCAACAAAATGATGAAGCCTCACCAAATGTTGTAGAAGAGAAAGAAGAGGAGAAGGTGGAGAACAACAAGCATGAGAGTGGTGAAGATGGTGATGAAGAAACTGTGACTGTTGCCCTACACATAGGGCTTCCCAGGATGGATACCTCTTCTGATCTGGGGTCATCTAGGGTGTCCTCAACTTGTATGGAAATGGGTGAAAAAGAGGAAGTGAACATAATTTCTGAACACCCTTTGGATAGATTGAACAAGGGTCAGTATTGGATTCCCACCCCTTCTCAGATTCTCATTGGTCCTACACAGTTCCCATGTCCTGTGTGCTCAAAAACTTTCAACAGATACAATAATCTTCAGATGCATATGTGGGGACATGGATCGCAATACAGAAAGGGGCCTGATTCTCTGAAAGGAACACAACCAACAGCTATGCTAAGGCTTCCATGCTTTTGTTGTGCACCAGGTTGCAAGCACAACATTGACCACCCAAGAGCAAGGCCTCTCAAGGATTTCAGAACTCTTCAAACACATTACAAGAGAAAGCACGGCATAAAACCCTACATGTGCAGAAAGTGTGGCAAAGCATTTGCAGTAAAAGGTGATTGGAGAACACATGAGAAGAACTGTGGCAAAATATGGTATTGTTTATGTGGGTCTGATTTCAAACACAAAAGGTCCCTAAAAGACCACGTCAAGGCCTTTGGCTATGGCCATGGTGCTTTTGGCATTGATTGCTTGCAAGAAGAAGATGAAGCAGCTTCTGAAATTGAACATGATGGAGAAAATTCAATATGA 1161 0.4315 MPTTLQNHVHLSPPLVQIMYTFATPNFSKLTTCLTSFTMTDPKSNLFHEWFNFMLLHPPYPSSSSSQSYPLANYSNNRFGIQLQGASSSYSYSYAAPPPPPPSSPPLREALPLINKISLTSEQVQQNDEASPNVVEEKEEEKVENNKHESGEDGDEETVTVALHIGLPRMDTSSDLGSSRVSSTCMEMGEKEEVNIISEHPLDRLNKGQYWIPTPSQILIGPTQFPCPVCSKTFNRYNNLQMHMWGHGSQYRKGPDSLKGTQPTAMLRLPCFCCAPGCKHNIDHPRARPLKDFRTLQTHYKRKHGIKPYMCRKCGKAFAVKGDWRTHEKNCGKIWYCLCGSDFKHKRSLKDHVKAFGYGHGAFGIDCLQEEDEAASEIEHDGENSI 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g02241 386 MobiDBLite consensus disorder prediction 132 157 - -
Phco9g02241 386 Pfam Zinc finger, C2H2 type 225 244 IPR013087 -
Phco9g02241 386 SUPERFAMILY beta-beta-alpha zinc fingers 293 329 IPR036236 -
Phco9g02241 386 Gene3D Classic Zinc Finger 288 358 - -
Phco9g02241 386 ProSiteProfiles Zinc finger C2H2 type domain profile. 225 252 IPR013087 -
Phco9g02241 386 PANTHER ZINC FINGER PROTEIN WIP2 76 380 IPR043584 GO:0003700|GO:0010468
Phco9g02241 386 MobiDBLite consensus disorder prediction 121 157 - -
Phco9g02241 386 FunFam zinc finger protein WIP2-like 224 247 - -
Phco9g02241 386 SMART c2h2final6 225 247 IPR013087 -
Phco9g02241 386 SMART c2h2final6 309 329 IPR013087 -
Phco9g02241 386 ProSiteProfiles Zinc finger C2H2 type domain profile. 309 329 IPR013087 -
Phco9g02241 386 MobiDBLite consensus disorder prediction 94 108 - -
Phco9g02241 386 MobiDBLite consensus disorder prediction 90 109 - -
Phco9g02241 386 FunFam Zinc finger protein WIP2 278 360 - -
Phco9g02241 386 SUPERFAMILY beta-beta-alpha zinc fingers 221 247 IPR036236 -
Phco9g02241 386 ProSitePatterns Zinc finger C2H2 type domain signature. 227 247 IPR013087 -
Phco9g02241 386 Gene3D Classic Zinc Finger 224 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g02241 Phco-Chr9 47761965 47768639 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Phco9g02241 zf-C2H2_6 3.1e-05 CL0361