Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g02235 ATGAGGAAACCTGATCTGATGGCCAACAAGGACAAAAAGAGCGACATAAAGAGCAAGTTGAGAAAAGGGTTGTGGTCACCTGATGAAGATGAGAAGCTCATAAGGTACATGCTCACAAATGGACAAGGGTGTTGGAGTGACATTGCAAGGAATGCTGGTCTCCAAAGGTGTGGCAAAAGTTGCCGTCTTCGTTGGATTAATTACTTGAGACCTGACCTCAAGCGTGGTGCATTCTCACCCCAAGAGCAAGACCTCATCTTTCATTTGCATTCTATTCTTGGTAACAGGTGGTCTCAGATTGCAGCACGTCTACCTGGTCGCACAGACAATGAAATAAAGAATTTCTGGAACTCTACGTTGAAGAAAAGGATGAAAACTAACACTTCTACTGGCTCACTAAATAACAGCACTGACTCATCAGAGTCTAAAGATGTTCTGAGTGGGATCATGCCCTTTAATAAACATGACATCATGAACATATGCATGGATTCCTCTTCATCCATATCATCCATGCAAGGAATGGTTTTGCCCGACCAATTTGACCCTTTTTCCATGTTGGTAAATAATCAGTGTGACATGACTAATGTTTCAGAAGATTTTCTCAACATGCCTACTTCATGCATGACACAAATTGGCATGGTAGATGGGCACCAAGGGAATTATGGGACATTGGAGCCAAATAACAAAATGGGGTTAGGAAACAACTTCTCCCTTCCTTCACTAGAAAGTAGAAGCATTGAAAGTGACAGTGTTCCAATTGATGTGAAAAGCCATAACAACCACTTCAATTATGGTTCCTTCAATAACACTGATAAGATTCAAGGCTCCAAGGTAGAGGACTTAATTGGGTTTGGAAATCATGGCCAAGGGGAATTTTATTTGGAGAATTTGATGCAAGACATAACCTCTTTCCCTTTACTTGAATTTTAA 930 0.4097 MRKPDLMANKDKKSDIKSKLRKGLWSPDEDEKLIRYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEQDLIFHLHSILGNRWSQIAARLPGRTDNEIKNFWNSTLKKRMKTNTSTGSLNNSTDSSESKDVLSGIMPFNKHDIMNICMDSSSSISSMQGMVLPDQFDPFSMLVNNQCDMTNVSEDFLNMPTSCMTQIGMVDGHQGNYGTLEPNNKMGLGNNFSLPSLESRSIESDSVPIDVKSHNNHFNYGSFNNTDKIQGSKVEDLIGFGNHGQGEFYLENLMQDITSFPLLEF 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g02235 309 FunFam MYB transcription factor 19 75 - -
Phco9g02235 309 CDD SANT 77 120 IPR001005 -
Phco9g02235 309 ProSiteProfiles Myb-like domain profile. 70 120 IPR001005 -
Phco9g02235 309 SMART sant 74 122 IPR001005 -
Phco9g02235 309 SMART sant 21 71 IPR001005 -
Phco9g02235 309 Gene3D - 76 146 - -
Phco9g02235 309 CDD SANT 25 69 IPR001005 -
Phco9g02235 309 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 70 124 IPR017930 -
Phco9g02235 309 ProSiteProfiles Myb-like domain profile. 17 69 IPR001005 -
Phco9g02235 309 FunFam Transcription factor MYB46 76 145 - -
Phco9g02235 309 Gene3D - 19 75 - -
Phco9g02235 309 PANTHER MYB DOMAIN PROTEIN 55 15 231 - -
Phco9g02235 309 SUPERFAMILY Homeodomain-like 20 116 IPR009057 -
Phco9g02235 309 Pfam Myb-like DNA-binding domain 25 83 - -
Phco9g02235 309 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 17 69 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g02235 Phco-Chr9 47693577 47695314 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Phco9g02235 Myb_DNA-bind_6 8.1e-13 CL0123