Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g02117 ATGGTGGTCTTATCTTCTTTCTGCTGCTCTGCACAATCACTGCTTGCCCATGTGGCTATCATTATTGTGCTATTCCGGCAAACTCACGGTGCCCAGGATCGTCCATTCTGTGCTCCTTCTTCCTGTGGCAAAATTCGCAACATAACTTATCCTTTCCGACTCAAAGGCGACCCACCTGGATGCGGTCTCCCAAGGTACGAATTAGATTGCGTAAAGAATGTGACAGTGTTCACTTTGTTTTCAGGGAAATACCATGTTCAGAATATCAACTACGAAACATACAAGATCCAATTGACTGATGCAGGTGTTGAGGAGGACACTGCTTGCTTCATTCCTCGCTATTTCATCTCTAGATCGAACTTCACTTACATTGGTGGTCCTCAAAATTACGCCACCGATCCACTAACTTTCTGGAACGGAAATGAGACTCCTGATTGGCCTCCTTATGTGGCGTTTCTAAACTGTACTGATCCAGTGACCGATGATCCTCGATATGTGGAAGTGAATGGCAGACTTTGTGATTCTGGAGGCCATGTCTATGCTGTTCTTTCTTCTTCTGCTAAATTCACAATGATGGACATCAAGGTTGGCTGCCATTTAAAGGCTGCTACCTTTACAAATAATAACCATTGCAACAACGTTTCTTATGCTGATATTCATGAGTGCCTGCATAATGGGTTTTCGTTGTATTGGGTGATGCCAGTTACTTGTACAGACCAATGTGGAAAGGGTGCGAGATGCCTCATCAATCAAACCACTCATCAAATTATTGGATGTCAACAAGATTACTATTGCCAAGTTTTGGGCGTAGGATTGGAAAAGAGGCACTGCGGAGTTCAACACCAGATTCTTGAATATACAGTTGGAATTCTATACTATATAGCACGTAAGAGCTCTCTTCCATATCTCTGCTATGTTGAATTCTTCATAATGGGACTAATTTATAGAATAACACGTTCACATCACTTTTCCAAATGGCAAGTGGAAGAAGATTTGATTTTATTAGCCCCTGTTCCAATATTTGTGGCTGCAAGATTTCTATTTGGAGTGGCACTTTTGCTTGCAGTTTTTATCCATACGTGGCGACGTAGGCATTGCTCAATGTATGAAAACATTGAAACTTTTTTGCTACACAACAATCTAAATCCTATTAGGTACGGATACAGAGAAATTAAGAAAATGAGCAGAGGTTACAAAGTTAAATTAGGTGAAGGAGGTTACGGATCTGTATACAAAGGAAAACTTCGAAGTGGGTCAGAAGTAGCAATAAAGATGTTGAAAAAATCGAAAGCTGATGGACAAGAGTTTATCAATGAAGTGGCTAGCATTGGAAGAATACATCATGTGAATGTGGTACGTCTCATTGGATATTGTGCTGAGGGAGAAAATCGTGCTCTAGTTTATGAGTACATGCCAAATGGTTCATTGGATAAATACATCTTCTCCAAAAAGGAAAGTATCCCTTTAAGTTATGAGAAAACATATGAAATATCTCTTGGCATAGCTCGTGGAATTGGTTATCTTCATCAAGGCTGTGATGTGCAAATTCTACATTTTGACATTAAGCCTCATAATATTCTTCTAGATGATGACTTCATTCCAAAGGTTTCAGATTTTGGACTTGCAAAGCTATATCCTGTCAAAGATACGTCTGTTGCTTTAACTATGGCTAGAGGAACTTTAGGTTACATGGCTCCAGAATTATTCTACAATAATATTGGTGGAGTATCCAATAAGGCCGATGTGTATAGTTTTGGAATGCTTTTGATGGAAATGGGAAGTAGGAGAAGGAACTCAAATCCTCATGCAGAACATTCAAGCCAAGAGTACTTCCCCTTTTGGATATATGATCAAATGAAAAATGTAAAAGATACTGACATAGAAGATGCCTCAGAAGAGGATAAGATTTTGGTGAAAAAAATGTATGTAGTTGCGCTTTGGTGTATACAATTGAAACCAAATGACCGTCCTTCAATGAAGAGAGTTGTGGAGATGCTTGAAGAAAAAGTTGAAAGTCTTGAAATACCTCCTAAGCCTGTTTATTATCCCCATGAAATAGTTGGACATGATTGCGGAGACAACTCAAACCAAACATCATGGAGTGGTTCAACTAGTTCTAGCGAAAATGTTGGCAAAACCAACACTAACATCCATGGGAGAGCAACGATTTGA 2172 0.395 MVVLSSFCCSAQSLLAHVAIIIVLFRQTHGAQDRPFCAPSSCGKIRNITYPFRLKGDPPGCGLPRYELDCVKNVTVFTLFSGKYHVQNINYETYKIQLTDAGVEEDTACFIPRYFISRSNFTYIGGPQNYATDPLTFWNGNETPDWPPYVAFLNCTDPVTDDPRYVEVNGRLCDSGGHVYAVLSSSAKFTMMDIKVGCHLKAATFTNNNHCNNVSYADIHECLHNGFSLYWVMPVTCTDQCGKGARCLINQTTHQIIGCQQDYYCQVLGVGLEKRHCGVQHQILEYTVGILYYIARKSSLPYLCYVEFFIMGLIYRITRSHHFSKWQVEEDLILLAPVPIFVAARFLFGVALLLAVFIHTWRRRHCSMYENIETFLLHNNLNPIRYGYREIKKMSRGYKVKLGEGGYGSVYKGKLRSGSEVAIKMLKKSKADGQEFINEVASIGRIHHVNVVRLIGYCAEGENRALVYEYMPNGSLDKYIFSKKESIPLSYEKTYEISLGIARGIGYLHQGCDVQILHFDIKPHNILLDDDFIPKVSDFGLAKLYPVKDTSVALTMARGTLGYMAPELFYNNIGGVSNKADVYSFGMLLMEMGSRRRNSNPHAEHSSQEYFPFWIYDQMKNVKDTDIEDASEEDKILVKKMYVVALWCIQLKPNDRPSMKRVVEMLEEKVESLEIPPKPVYYPHEIVGHDCGDNSNQTSWSGSTSSSENVGKTNTNIHGRATI 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g02117 723 CDD STKc_IRAK 402 668 - -
Phco9g02117 723 Gene3D Transferase(Phosphotransferase) domain 1 471 675 - -
Phco9g02117 723 ProSitePatterns Protein kinases ATP-binding region signature. 402 424 IPR017441 GO:0005524
Phco9g02117 723 Pfam Protein kinase domain 400 664 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco9g02117 723 Gene3D Phosphorylase Kinase; domain 1 373 470 - -
Phco9g02117 723 SMART serkin_6 398 666 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco9g02117 723 SUPERFAMILY Protein kinase-like (PK-like) 385 667 IPR011009 -
Phco9g02117 723 FunFam PR5-like receptor kinase 471 678 - -
Phco9g02117 723 ProSitePatterns Serine/Threonine protein kinases active-site signature. 516 528 IPR008271 GO:0004672|GO:0006468
Phco9g02117 723 PANTHER RUST RESISTANCE KINASE LR10-RELATED 368 693 IPR045874 GO:0004672
Phco9g02117 723 ProSiteProfiles Protein kinase domain profile. 396 670 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco9g02117 723 FunFam serine/threonine-protein kinase PBS1-like 367 470 - -
Phco9g02117 723 Pfam Wall-associated receptor kinase galacturonan-binding 37 100 IPR025287 GO:0030247
Phco9g02117 723 MobiDBLite consensus disorder prediction 692 723 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g02117 Phco-Chr9 46439695 46442860 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Phco9g02117 Pkinase 2.9e-48 CL0016