Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g02096 ATGGAGGGAAAACAACTGAATGTGAGATCAATATATTCCTTTATTTTTCTGTTTTTGCTAGGCTTCAAACCATTGGTTACAGAGGCACAAGAACCCAACTATGTGGGAGATGACTGCAATTCCACCACTACAACATCTCTCAGCAGTGCATACAAAACCAACCTTATCAGTGTCCTCTCATGGCTATCCTCAGATGCAGCCACGAGCAAAGGCTATAACCACAACAGCTTTGGCAACAACACCCCTGGTGCAGATGCTGCTGTGTATGGCCTCTATGATTGCCGTGGTGATGTTTCTGGATACTTTTGTCAGTTCTGTGTGTCCACTGCTTCCAGAGAAGTTCTTCAGCGCTGCTCCAACAGGGTATCTGCTATTATATGGTATGATTTCTGCATCTTAAGGTACTCAAATGAGAACTTCTTTGGGAATGTTACAGTAGACCCATCATGGAATCATACTGGACCAAAAAATGTCTCTAGTGCGGAAGAGATTCAGAAGGGTGAGGGCTTTATGAGAAGTTTGATCAGAAAAGCTGCTGTGGAGACCAACCAGTTGTACTATATGGATGGCTTCAATTTGAGTTCCACTCAGAGAAGGTATGGATTGGGTCAGTGCAGTAGAGATCTCACAAATGAAGAGTGCACACAGTGTTTGGAGGCCATGTTAGCAAAAGTTCCCAAATGTTGTGAGCATAAGTTGGGGTGGTTCGTATGGAGTGCAAGTTGTCTCATAAAGTATGATGACTATATTTTCTACCTTTTTCCCAATCCAGCATCTTCTGTTTCTGTGCCTGATACACAAATAGCCAAACAAAGGAGTGGTAGTAAGGCAAAACTATTGATCATTGGCTTAAGCGTGCTGGGGGCAGTAGCTTTGCTATGTTTCAGTGTTTATTGCTTCTGGTTCAGGAAAAGAACTAGAAGTGAAAGAAAAACAGGCGTGCGTATTCCTGACACCATTCGTCTATCATCATATCACAATGTTCAAACTGAGGTAACACTGAATCCAGACCTTCCTACAATCCCATTAAACACAATTCTACAAAGTACTGATAACTTTTCAGAAGCATCTAAGCTAGGGGAAGGTGGATTTGGCCCAGTTTACAAGGGAATTCTACCAGATGGAAGACAAATTGCAGTGAAAAGACTCTCAGAATCTTCTGGTCAAGGGTCAGAAGAGTTCAAGAATGAAGTAATGTTTATAGCTAAATTGCAGCATCGCAACCTTGTAAGACTTTTGGCATGCTGCTTGGAGGAAAAAGAGAAGATACTTGTATATGAGTATATGACCAATGCAAGTCTCGACTTTCACCTCTTTGATGAAAGAAAGAAAAGACAGCTGGACTGGAAACTAAGATTAAGCATTATACATGGCATAGCAAAAGGTCTCTTGTACCTTCATGAGGATTCCAGACTCAAAGTTATTCATAGAGATATCAAAGCTAGTAATGTTTTATTAGATGATGAGATGAATCCTAAAATATCAGATTTTGGATTGGCAAGATCATTTGAGAAAGGCCAGAACCAAGCAAATACAAGACGAGTAATGGGCACATATGGATACATGGCTCCAGAGTACGCTATGGAAGGATTGTTTTCAGTGAAATCTGATGTTTTCAGTTATGGAGTTCTTGTTCTAGAAATCATTTGTGGCAAAAAGAACAGTGGATTCTATCTATCAGAATGTGGTCAAAGTCTTACACTATATGCTTGGAAAGTTTGGTGTGCAGGAAAATGTTTGGAACTAATGGATCCAGTGTTGGAGGAATGTTGTGTGGAGAGTGAAGTTGTGAAGTGCATACACATTGGTCTGTTGTGTGTTCAAGAAGATGCAGCAGATAGACCAACAATGTCCACTGTGGTTGTAATGCTAGCAAGTGACATGATGTCTCTTCCAAAACCTAACCAACCAGCATTTTCAGTAGGAAGAATGACCTTAGAGGATGCATCTACATCAAAAAGTTCCAAGAATCTTTCCATTAATGATGTGACTGTCTCTAACATTTTTCCAAGATAA 2016 0.4053 MEGKQLNVRSIYSFIFLFLLGFKPLVTEAQEPNYVGDDCNSTTTTSLSSAYKTNLISVLSWLSSDAATSKGYNHNSFGNNTPGADAAVYGLYDCRGDVSGYFCQFCVSTASREVLQRCSNRVSAIIWYDFCILRYSNENFFGNVTVDPSWNHTGPKNVSSAEEIQKGEGFMRSLIRKAAVETNQLYYMDGFNLSSTQRRYGLGQCSRDLTNEECTQCLEAMLAKVPKCCEHKLGWFVWSASCLIKYDDYIFYLFPNPASSVSVPDTQIAKQRSGSKAKLLIIGLSVLGAVALLCFSVYCFWFRKRTRSERKTGVRIPDTIRLSSYHNVQTEVTLNPDLPTIPLNTILQSTDNFSEASKLGEGGFGPVYKGILPDGRQIAVKRLSESSGQGSEEFKNEVMFIAKLQHRNLVRLLACCLEEKEKILVYEYMTNASLDFHLFDERKKRQLDWKLRLSIIHGIAKGLLYLHEDSRLKVIHRDIKASNVLLDDEMNPKISDFGLARSFEKGQNQANTRRVMGTYGYMAPEYAMEGLFSVKSDVFSYGVLVLEIICGKKNSGFYLSECGQSLTLYAWKVWCAGKCLELMDPVLEECCVESEVVKCIHIGLLCVQEDAADRPTMSTVVVMLASDMMSLPKPNQPAFSVGRMTLEDASTSKSSKNLSINDVTVSNIFPR 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g02096 671 SMART serkin_6 353 629 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco9g02096 671 FunFam Cysteine-rich receptor-like protein kinase 28 35 139 - -
Phco9g02096 671 SUPERFAMILY Protein kinase-like (PK-like) 339 655 IPR011009 -
Phco9g02096 671 FunFam Liguleless narrow1 429 632 - -
Phco9g02096 671 Pfam Protein tyrosine and serine/threonine kinase 357 622 IPR001245 GO:0004672|GO:0006468
Phco9g02096 671 ProSiteProfiles Gnk2-homologous domain profile. 146 251 IPR002902 -
Phco9g02096 671 FunFam Cysteine-rich receptor-like protein kinase 10 149 251 - -
Phco9g02096 671 Pfam Salt stress response/antifungal 171 249 IPR002902 -
Phco9g02096 671 Pfam Salt stress response/antifungal 39 137 IPR002902 -
Phco9g02096 671 Gene3D Transferase(Phosphotransferase) domain 1 429 634 - -
Phco9g02096 671 ProSiteProfiles Protein kinase domain profile. 353 639 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco9g02096 671 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 38 667 - -
Phco9g02096 671 ProSitePatterns Serine/Threonine protein kinases active-site signature. 474 486 IPR008271 GO:0004672|GO:0006468
Phco9g02096 671 Gene3D - 151 251 IPR038408 -
Phco9g02096 671 Gene3D - 32 140 IPR038408 -
Phco9g02096 671 Pfam Domain of unknown function (DUF3403) 626 671 IPR021820 GO:0004674
Phco9g02096 671 CDD STKc_IRAK 359 624 - -
Phco9g02096 671 ProSiteProfiles Gnk2-homologous domain profile. 33 140 IPR002902 -
Phco9g02096 671 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 319 428 - -
Phco9g02096 671 Gene3D Phosphorylase Kinase; domain 1 317 428 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g02096 Phco-Chr9 46185465 46188609 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Phco9g02096 PK_Tyr_Ser-Thr 1.8e-48 CL0016