Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g02084 ATGGTAGGAACACAAGGAAACGTGAGATCAATATGCTTTAGTTTCTTGTTATTACTGAGTTTCAGATCATTCAGTACAAAGGCCAAAGCAGACACATCCCTAGGAAGTAACTGCGACAACACCACCCAACAGACTCTCAGCAGTGCATACCAAACCAACCTTGATAGAATCCTCAAATGGATGACCTCTGATGCAGCCACAAGCAACGGTTATAACCACACCACCATAGGCACCAATAGCTCTGTGTATGGCCTCTATGATTGTGGTGGTGATGCGGTTGGATACTTTTGTCAATTTTGTGTTTCCACTGCTGTAAGAGAAGCCCCTCAGCTCTGCTCCAATAGGGTGTCTGCTGTGGTGTGGAATGATTACTGCGTTATAAGGTACTCAAATGAGGACTTCTTTGGGAAAGCTTTGGCATACCCAACATGGCATACTATTGGAACAAAAAACATATCCAGCACGACAGAGATTCAAAAAGGTGAGGATTTTGTGAGAAGTTTGATCAGAAAAGCAACTAATGAAACCAACCAGTTGTACTATAAGGGTGGCTTCAATTTGAGTGCCACTGAGAGCAGGTATGGCGTGGTGCAGTGCACTAGAGATCTCCCAAATGAAGAGTGCAGACAGTGTTTGGAGGAGATACTGGCTGAAGTTCCCAAATGTTGTGAACAAAAAGTAGCATGGATGGTTTGGTCTGGAAGTTGTTTGATAAAGTATGATGATTATATGTTCTACCTTCTTAACAATGAACCATCTCCAGCTCCTGCCGCCAATCCACAAACAGATAAACACGGGGTTAATAACAGGTCAAGAATATTGATCATTATCTTCAGTGTGATCGGGGCAATAATTGTACTATGTTTCAGTCTATACTGCTTCTGGTACAGGAAGAGGGTGAGAAAGGGTAATCATCAAGAAAAAACGAGAGATGGAGTTAGAGAAGAAGAGCTTCCTCTACCCTCTTTTCACAAAATTCAATCGGAGGAAACGTGGAACACAGACCTGCCTAGAATCCCATTTGCCACAATTCTACAGAGTACCTATAACTTTTCAGAAGCATCTAAATTAGGGGAAGGAGGATTCGGCCCCGTTTACAAGGGAACTCTACCTGATGGAACACAAATTGCAGTCAAAAGACTCTCTAAATTTTCTGGTCAAGGCTCAGAGGAGTTCAACAATGAAGTAATGTTTATAGCTAAATTGAGGCATCGCAACCTTGTAAGACTTTTGGCATGTTGCTTAGAGGAAAATGAAAAGATACTTGTATATGAGTATTTGCCGAATAAAGGTCTCGACTTTCACCTATTTGATGTTGAGAAAAGAAAACACTTTGACTGGAAACTAAGATTAAGCATTATCCATGGAATAGCAAGAGGTATTCTGTACCTGCATGAGGACTCTCAACTCAGAGTAATTCATAGAGATCTCAAAGCCAGCAACGTTCTATTAGACCATGACATGAATCCCAAAATATCAGATTTTGGATTGGCAAGAGCATTTGAAGGGGGACAGAATCAAGCAAATACGAAACGAGTAATGGGCACTTATGGATACATGGCTCCGGAATACGCTATGGAAGGACTATTTTCTGTGAAATCTGATGTTTTCAGCTTTGGAGTTCTTGTTCTAGAAATCATTTGTGGGAGAAAGAATGGTGGATTCTACATGTCAGATGGTCAAACTCTCCTTGTATGCGCTTGGAGAATATGGTATGAAGGAAAATGTTTGGAATTGATGGATCCATGGCTAGAAAAATCCTTCATAGGCGGTGAAGTAGAGAGGAGCATACAGATTGGTTTGTTGTGTGTTCAAGAAGATGCAAGAGATAGACCAACCATGTCTGATGTTGTTGTAATGCTGGCGAGTGACAGAGTGGCCATTCCAAAACCCAAGCACCCAGCATTTTCAATTGGAAGAACAACCTCAGAGGAAGTCTCTACATCAAGAAGTTCCAAGAATCTTTCCATTAATAATATAACATCCTCTATTACTTTACCGAGAAAACCATCCCCAGAAACCCTGCAAGTCCCTGTCAAAGCCAGAACCAGCAGCACCCTGTGTTTCTCCAACAAGGAATCAAGCCTGACTGAGCCATCAGTTTTCTTACTGACAGAAATAATTCCACTATCCCTATTCCACTCTGTTAATCTGGAAGCTGATTTATAG 2169 0.4149 MVGTQGNVRSICFSFLLLLSFRSFSTKAKADTSLGSNCDNTTQQTLSSAYQTNLDRILKWMTSDAATSNGYNHTTIGTNSSVYGLYDCGGDAVGYFCQFCVSTAVREAPQLCSNRVSAVVWNDYCVIRYSNEDFFGKALAYPTWHTIGTKNISSTTEIQKGEDFVRSLIRKATNETNQLYYKGGFNLSATESRYGVVQCTRDLPNEECRQCLEEILAEVPKCCEQKVAWMVWSGSCLIKYDDYMFYLLNNEPSPAPAANPQTDKHGVNNRSRILIIIFSVIGAIIVLCFSLYCFWYRKRVRKGNHQEKTRDGVREEELPLPSFHKIQSEETWNTDLPRIPFATILQSTYNFSEASKLGEGGFGPVYKGTLPDGTQIAVKRLSKFSGQGSEEFNNEVMFIAKLRHRNLVRLLACCLEENEKILVYEYLPNKGLDFHLFDVEKRKHFDWKLRLSIIHGIARGILYLHEDSQLRVIHRDLKASNVLLDHDMNPKISDFGLARAFEGGQNQANTKRVMGTYGYMAPEYAMEGLFSVKSDVFSFGVLVLEIICGRKNGGFYMSDGQTLLVCAWRIWYEGKCLELMDPWLEKSFIGGEVERSIQIGLLCVQEDARDRPTMSDVVVMLASDRVAIPKPKHPAFSIGRTTSEEVSTSRSSKNLSINNITSSITLPRKPSPETLQVPVKARTSSTLCFSNKESSLTEPSVFLLTEIIPLSLFHSVNLEADL 722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g02084 722 SUPERFAMILY Protein kinase-like (PK-like) 334 648 IPR011009 -
Phco9g02084 722 Gene3D Phosphorylase Kinase; domain 1 319 426 - -
Phco9g02084 722 FunFam Cysteine-rich receptor-like protein kinase 10 314 426 - -
Phco9g02084 722 ProSitePatterns Serine/Threonine protein kinases active-site signature. 472 484 IPR008271 GO:0004672|GO:0006468
Phco9g02084 722 Gene3D Transferase(Phosphotransferase) domain 1 427 630 - -
Phco9g02084 722 Pfam Domain of unknown function (DUF3403) 623 668 IPR021820 GO:0004674
Phco9g02084 722 ProSiteProfiles Gnk2-homologous domain profile. 32 134 IPR002902 -
Phco9g02084 722 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 22 663 - -
Phco9g02084 722 Pfam Salt stress response/antifungal 38 131 IPR002902 -
Phco9g02084 722 Pfam Salt stress response/antifungal 163 243 IPR002902 -
Phco9g02084 722 FunFam Liguleless narrow1 427 629 - -
Phco9g02084 722 FunFam Cysteine-rich receptor-like protein kinase 10 143 245 - -
Phco9g02084 722 ProSiteProfiles Protein kinase domain profile. 351 636 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco9g02084 722 Gene3D - 31 134 IPR038408 -
Phco9g02084 722 Gene3D - 143 245 IPR038408 -
Phco9g02084 722 SMART serkin_6 351 626 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco9g02084 722 ProSiteProfiles Gnk2-homologous domain profile. 140 245 IPR002902 -
Phco9g02084 722 Pfam Protein tyrosine and serine/threonine kinase 355 618 IPR001245 GO:0004672|GO:0006468
Phco9g02084 722 CDD STKc_IRAK 357 621 - -
Phco9g02084 722 FunFam Cysteine-rich receptor-like protein kinase 28 34 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g02084 Phco-Chr9 45978612 45981963 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Phco9g02084 PK_Tyr_Ser-Thr 7.5e-45 CL0016