Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g02071 ATGAATTCCGTAATAAGTGTGCATGCTTGGTCTTTGTGGGTTTTGAGGGGTGGAAGTTATGGAAGGATATCAAATAAGATGAGACGAGTGAGTAATGAAATTGAAGATGAGGTGCTTCCCAGTGATCTGAGTGCGGCACAGTTGAATGATGAGAGTTACGAAGGAAGTACCAGTATTGTGCTGAAGAAAGGTCCGTGGACATCAACCGAAGATGATATTTTGGTGGATTATGTCAACAAGCATGGGGAAGGGAATTGGAATGCTGTTCAGAAGCACACAGGGTTACTACGTTGTGGAAAAAGTTGTCGGCTGCGATGGGCTAATCACCTAAGGCCAAATTTAAAGAAAGGGGCGTTTACCGCAGAAGAGGAGCGGTTCATTGCTGAACTTCATGCCAAAATGGGAAACAAATGGGCACGCATGGCAGCACATTTGCCTGGTCGCACCGATAATGAGATAAAGAATTATTGGAATACCCGGATCAAGAGGCGTCAACGGGCTGGGTTGCCACTTTATCCTCCAGAAGTGTGTTTGCAAGGTCTTCAAGAGAGTCAGCGTAACCAAAGTAATGGTGGAGTTAATGGTGGCGATAAAATGCATCTTGATTTATTGCAGACAAATAGTTATGAGATACATGGTGCTATATTTGACAGTCTGAAGGATAATCAGGGAATCTTACCTTATGCACCAAAGTTTTCCGATGCTTCTGTTTATGGCAATATGCTAAAAGGTCTTGATTCTTCTCAATATTGTAGTGTTATGACACCAGCATCACCTAAGCACAAGCGTCTTAGGGAGTCAACAATACCGTTTATTGGTTCCAATGATACGAAAAAAAATGGTTTATATCCATTTTGTCAAATTCGGGACAATAATTCTGATAAGATTGCACTATCATTTGGAATGCAAGCACTCCTTGATCCTGGTCCCTCATCACACAACTCAATGTGTTACAGCCATTCACTTTCAAATGGCAATTCCTCTACTTCTAAGCCAACTTTTGAGGCTGTGAAGTTGGAGCTCCCTTCACTCCAATATCCAGAACTTGATTTAGGTAGCTGGGGTACATCTCCCCCACCTCCGTTGCTCGAGTCAGTTGATGATTTCTTTCAGTCTCCTACACCAATTAGTACACTCGAGTCAGATTGTTCTTCTCCACAAAATAGTGGCCTGCTGGATGCCTTACTTTATCAGGCAAAGACTCTGAGCAGTTCAAAGAACCATTGTTCTGACAAAAGTTCAAATTCTTCTACTGCAACCCCTGGTGACAGAGGCGACAGCTCTGCTTTGAATGTGTACGAGACAGAATGGGAAGATTACGCTGACCCTGTATCTCCCTTTGGTGCGACTTCAGTATTGAATGAGTGCCCTGCTCTTAGAGCCAGTGAGAATTCATTGGACGAACAGCTATCCTTCCAGACATTTACAGGCAACATTCCAAAATTAGAGTTTGTTGATCAGGTTTGGACTCCTGACAGTGAAAATCAAACCTTGTCCCTCTTGAATATCACTCGTCCAGACTTCTTGTTTGCTTCAGATTGGCATGACTTAGGTTCTGGGGATGGCAAGAACCAAGCCATCACAACTGATACAACAATGACCCTTCTGGGAGACCATTTTGCCTCTGACCGTAAGCATATGACTTCTGGAACTTCTCAGTCAAGTCAGGTGTGGGGTTTTGGTTCTTGTGCTACGGCAAATAATATGCCTGCTCTGTGTCAGCTATCCGATCTTGGTTAA 1740 0.4345 MNSVISVHAWSLWVLRGGSYGRISNKMRRVSNEIEDEVLPSDLSAAQLNDESYEGSTSIVLKKGPWTSTEDDILVDYVNKHGEGNWNAVQKHTGLLRCGKSCRLRWANHLRPNLKKGAFTAEEERFIAELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRIKRRQRAGLPLYPPEVCLQGLQESQRNQSNGGVNGGDKMHLDLLQTNSYEIHGAIFDSLKDNQGILPYAPKFSDASVYGNMLKGLDSSQYCSVMTPASPKHKRLRESTIPFIGSNDTKKNGLYPFCQIRDNNSDKIALSFGMQALLDPGPSSHNSMCYSHSLSNGNSSTSKPTFEAVKLELPSLQYPELDLGSWGTSPPPPLLESVDDFFQSPTPISTLESDCSSPQNSGLLDALLYQAKTLSSSKNHCSDKSSNSSTATPGDRGDSSALNVYETEWEDYADPVSPFGATSVLNECPALRASENSLDEQLSFQTFTGNIPKLEFVDQVWTPDSENQTLSLLNITRPDFLFASDWHDLGSGDGKNQAITTDTTMTLLGDHFASDRKHMTSGTSQSSQVWGFGSCATANNMPALCQLSDLG 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g02071 579 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 111 165 IPR017930 -
Phco9g02071 579 Gene3D - 118 164 - -
Phco9g02071 579 MobiDBLite consensus disorder prediction 405 425 - -
Phco9g02071 579 FunFam MYB-related transcription factor 62 115 - -
Phco9g02071 579 SMART sant 115 163 IPR001005 -
Phco9g02071 579 SMART sant 62 112 IPR001005 -
Phco9g02071 579 FunFam Transcription factor GAMYB 118 164 - -
Phco9g02071 579 Gene3D - 62 115 - -
Phco9g02071 579 SUPERFAMILY Homeodomain-like 62 157 IPR009057 -
Phco9g02071 579 ProSiteProfiles Myb-like domain profile. 111 161 IPR001005 -
Phco9g02071 579 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 49 526 - -
Phco9g02071 579 Pfam Myb-like DNA-binding domain 116 159 IPR001005 -
Phco9g02071 579 Pfam Myb-like DNA-binding domain 63 110 IPR001005 -
Phco9g02071 579 MobiDBLite consensus disorder prediction 405 428 - -
Phco9g02071 579 ProSiteProfiles Myb-like domain profile. 58 110 IPR001005 -
Phco9g02071 579 CDD SANT 65 110 IPR001005 -
Phco9g02071 579 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 110 IPR017930 -
Phco9g02071 579 CDD SANT 118 159 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g02071 Phco-Chr9 45732984 45736532 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Phco9g02071 Myb_DNA-binding 1.5e-14 CL0123