Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g02020 ATGTCATCACTATTTGCATCGTGTATATTCTTATTTCCTTTTGTCCTGCTGGAAAAAAAGGATGTTGATTTTGATTCGGAAGCAAAAAAACAAGTTCGAGGATCAACATCTACAAAGAGATCACGTGCAGCGGAGAGGCGTCGTGATCAGATTAATGAAAAGATGAGAGCTCTCCAAGAACTTATACCTCAATGTAATAAGTCGGACAAAGCTTCAATGTTGGATGAAGCAATTTCGTACTTGAAGTCATTGCAGTTACAAGTGCAGATGATGTCCATGGGATATGGCATGCAGTACATGCCAGCAATAGGAATAGGGGTTGGAATGGGTATGGGTATGGAAATGGGAATGAACAGACCTGTAATGTCGTTTCCCAATATGTTACCTGGTTCTCCTTTGCCAGCAGTTGCTCATTTGGGACCAAGGTTTCCAATGCCTCCCTTCCACATGTCGTGTGTTCCTGCAACAAATTCATCGAGAATGCAAGCAGAAAATTAG 498 0.4177 MSSLFASCIFLFPFVLLEKKDVDFDSEAKKQVRGSTSTKRSRAAERRRDQINEKMRALQELIPQCNKSDKASMLDEAISYLKSLQLQVQMMSMGYGMQYMPAIGIGVGMGMGMEMGMNRPVMSFPNMLPGSPLPAVAHLGPRFPMPPFHMSCVPATNSSRMQAEN 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g02020 165 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 25 155 IPR031066 -
Phco9g02020 165 MobiDBLite consensus disorder prediction 27 48 - -
Phco9g02020 165 CDD bHLH_AtPIF_like 42 97 IPR047265 -
Phco9g02020 165 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 40 98 IPR036638 GO:0046983
Phco9g02020 165 Gene3D - 33 93 IPR036638 GO:0046983
Phco9g02020 165 Coils Coil 41 61 - -
Phco9g02020 165 Pfam Helix-loop-helix DNA-binding domain 46 85 IPR011598 GO:0046983
Phco9g02020 165 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 35 84 IPR011598 GO:0046983
Phco9g02020 165 SMART finulus 42 90 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g02020 Phco-Chr9 45151413 45153579 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phco9g02020 HLH 4.6e-10 No_clan