Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g01995 ATGGTGTTGTTATTTCCAACGTTTCAGTCCATGAAGCTCCTATCATTATGGCTGCTTCTACTTGTAATGGCAAATTCTGTCCATGCAGCACTGTCTTCCTCACTCTCATCACTTCAACACACAGAAGCAAACGCTCTGTTGAAGTGGAAAGCAAGCCTTGACAACCCAAGTCAGACATTGCTATCTTCATGGCATGGCAACAGTTCATGCAACTGGCTTGGAATTTCTTGTGACTACTCAGGATCAGTCTCCAACATAAATCTTACAAACATTGGATTATCTGGTACGCTTCAAACTCTCAATTTTTCAACACTTCCAAACATCCTCACTCTAGATATCAGTCTTAACTCCTTCAGTGGATGCATTCCTCCTCAAATTGGAGTGTTATCCAAACTCACTCATCTTGATTTGAGTCACAATCATCTCACTGGACCAATTCCTTCTGAAATAACTCACTTGGTCAGTCTTCACATTTTATATCTGGCAAATAATGTTTTCAATGGTAATATTCCCGTGGAAATTGGGAAGTTGGTGAACTTGAGCAGGTTATCGGTTTTCAATAATAGTCTTTCGGGTTCTATTCCTCAAGAAATTGGAATGATGACAAATTTGAGTGAACTTGATTTGTCGCTTAACTCTTTGTCAGGTATAATTCCCTCTACAATTGGAAATTTGAGCAAGTTAGTCTATTTGTACATGTCTGACAACCATCTATCTGGATCTATTCCTAATGAAGTGGGAAAACTCCATTTTCTTATGGTGATCCTATTGATAAAAAATTATCTTTCTGGACCAATTCCATCTTCCATCGGTAACTTGGTTAATTTGGAATATATTCTCTTTTATGAAAACAAACTCTCCGGAACAATTCCTTCAACTATTGGTCACTTGACAAAGCTCACCACACTTTCTTTGTCTCTTAACTCTTTGTCAGGTACAATCCCCTCTACAATTGGAAATTTGACAAAGCTCACCATACTTTCTTTGTCTCTTAACTCTTTGTCAGGTACAATCCCCTCTACAATTGGAAATTTGACAAAGCTCACCAAACTTGATTTATTCTCAAATAAGCTTGGTGGATACATTCCAATTGAAATGAATATGCTAAACAACCTGGAAGTTTTGCACTTATATGAAAATCATTTTATTGGTCATTTGCCGCACAACATTTGCTCAAGTGAAAAGTTGACAAATTTTAGTGCTGGCAGAAACCATTTCACAGGTCCATTACCTAAGAGTTTGAAGAATTGCTCCAATCTCATAAGAGTTTTGCTAAACCAAAACAATTTAACAGGAAATATAACAAAGGATTTAGGTATATACCCAAACTTGGATTACATAGACCTAAGTGAAAACAACTTTTATGGCCATCTTTCCCCAAATTGGGGAAAATGCCATAGTCTCACAAGTCTCAAAATCTCCAACAACAATTTATCAGGTAGCATTCCAAGAGAACTAAGTCAAGCAACCAATTTACATGTACTTCAATTGTCTTCAAATCACCTCACAGGAGACATTCCTGAAGATTTAGGTAATTTGACCTACTTGATCAAACTCTCTCTCAATATGAATAATCTTTCAGGAAATGTTCCTATACAAATAGCATCATTGCAAAGTCTTGACACCTTAGAGCTCGGAGCAAATAACTTTTCTGGCTTAATTCCAAATCAACTTAGCAATTTGGTCAATTTATTAAATTTGAATTTGAGCCAAAATAAATTTAGGGAAAGTATTCCATCTGAGTTTGGTAAATTAAAATATCTTCGAAGCCTTGATCTGAGCATGAACATTTTGAGTGGAAAAATACCACCAATGTTGGGAGAGTTGAAAAGTTTAGAAACATTAAATCTCTCACACAATCATCTTGCAGGCGATCTCTCTAGCCTTGATGAGATGATAGGCTTGACATCTGTTGATATATCATACAACCAATTACAGGGTCCACTTCCAAACATTACAGGCTTCCATATGGCTACCATTGGAGCATTGATAAATAATAAAGGCTTGTGTGGTAATGTCTCAGGCTTGGAACCATGCCCAACATCACGTGACAAATCCCAAAATCATAAGACTAACCGTGTCATATTGGTACTTTTACCCACTGGTTTGGGCATTTTCATGCTAGCATTATTTGTCTTTGGAGTCTCATATCATCTTTGTAGAAGGTCAAAGACAAAAGAGCATCCGGATGTAGAATCATCAGGCCAAAATCTTTTTGAGATATGGAGTTTTGATGGAAAGATGGTGTATGAGAACATAATTGAAGCCACAGAAAAGTTTGACAATAAACATCTCATTGGAGTTGGAGGACAAGGAAGTGTTTACAAAGCTGAACTGCAAACAAATCAAATTGTTGCTGTTAAGAAATTCCATTCAGTACAAAATGGTGAAGGGTCCAGTGTTAAAGCTTTCAAAAGTGAAATTCAAGCTTTGACAGAGATTCGACATCGTAACATTGTGAGGCTATATGGGTTTTGTTCTCATTCCCGATTCTCATTTTTGGTGTATGAGTTCTTGGAAAAGGGGAGCATAGATAATATTTTAAAAGACAATGAACATGCAATTTCATTTAATTGGAATATGAGGATTGATGCCATTAAAGGTGTAGCAAATGCTTTATTCTATATGCATCATGATTGTTCACCCCCAATCGTTCATCGAGATATATCAAGCAAGAATGTTCTTTTGAATTTGGAGTATGTGGCTCATGTCTCAGATTTTGGAACAGCCAAGCTTCTTAATCCTAATTCAACCAATTGGACCTCATTTGTGGGAACTTTTGGATATGCTGCTCCAGAACTTGCATACACAATGAATGTGAATGAAAAATGTGTACAGCTTTGGGATCAACGTCTCCCATACCCTACAAATATTTCTAAGGAGATAGCTTTGATTATAAAGATAGCAAATGTTTGCTTGACTGAAAGTCCTAGTTCTCGTCCTACCATGGAGCAAGTTGTCAACTACTTTTCAGTGTAG 2979 0.3679 MVLLFPTFQSMKLLSLWLLLLVMANSVHAALSSSLSSLQHTEANALLKWKASLDNPSQTLLSSWHGNSSCNWLGISCDYSGSVSNINLTNIGLSGTLQTLNFSTLPNILTLDISLNSFSGCIPPQIGVLSKLTHLDLSHNHLTGPIPSEITHLVSLHILYLANNVFNGNIPVEIGKLVNLSRLSVFNNSLSGSIPQEIGMMTNLSELDLSLNSLSGIIPSTIGNLSKLVYLYMSDNHLSGSIPNEVGKLHFLMVILLIKNYLSGPIPSSIGNLVNLEYILFYENKLSGTIPSTIGHLTKLTTLSLSLNSLSGTIPSTIGNLTKLTILSLSLNSLSGTIPSTIGNLTKLTKLDLFSNKLGGYIPIEMNMLNNLEVLHLYENHFIGHLPHNICSSEKLTNFSAGRNHFTGPLPKSLKNCSNLIRVLLNQNNLTGNITKDLGIYPNLDYIDLSENNFYGHLSPNWGKCHSLTSLKISNNNLSGSIPRELSQATNLHVLQLSSNHLTGDIPEDLGNLTYLIKLSLNMNNLSGNVPIQIASLQSLDTLELGANNFSGLIPNQLSNLVNLLNLNLSQNKFRESIPSEFGKLKYLRSLDLSMNILSGKIPPMLGELKSLETLNLSHNHLAGDLSSLDEMIGLTSVDISYNQLQGPLPNITGFHMATIGALINNKGLCGNVSGLEPCPTSRDKSQNHKTNRVILVLLPTGLGIFMLALFVFGVSYHLCRRSKTKEHPDVESSGQNLFEIWSFDGKMVYENIIEATEKFDNKHLIGVGGQGSVYKAELQTNQIVAVKKFHSVQNGEGSSVKAFKSEIQALTEIRHRNIVRLYGFCSHSRFSFLVYEFLEKGSIDNILKDNEHAISFNWNMRIDAIKGVANALFYMHHDCSPPIVHRDISSKNVLLNLEYVAHVSDFGTAKLLNPNSTNWTSFVGTFGYAAPELAYTMNVNEKCVQLWDQRLPYPTNISKEIALIIKIANVCLTESPSSRPTMEQVVNYFSV 992
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g01995 992 Pfam Leucine rich repeat 179 238 IPR001611 GO:0005515
Phco9g01995 992 Pfam Leucine rich repeat 442 502 IPR001611 GO:0005515
Phco9g01995 992 Pfam Leucine rich repeat 299 358 IPR001611 GO:0005515
Phco9g01995 992 Gene3D Ribonuclease Inhibitor 202 367 IPR032675 -
Phco9g01995 992 Gene3D Ribonuclease Inhibitor 368 682 IPR032675 -
Phco9g01995 992 ProSiteProfiles Protein kinase domain profile. 760 992 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco9g01995 992 Pfam Leucine rich repeat N-terminal domain 41 78 IPR013210 -
Phco9g01995 992 SUPERFAMILY RNI-like 111 453 - -
Phco9g01995 992 SMART LRR_typ_2 297 320 IPR003591 -
Phco9g01995 992 SMART LRR_typ_2 490 513 IPR003591 -
Phco9g01995 992 SMART LRR_typ_2 225 249 IPR003591 -
Phco9g01995 992 SMART LRR_typ_2 129 153 IPR003591 -
Phco9g01995 992 SMART LRR_typ_2 321 345 IPR003591 -
Phco9g01995 992 SMART LRR_typ_2 465 489 IPR003591 -
Phco9g01995 992 SMART LRR_typ_2 609 636 IPR003591 -
Phco9g01995 992 SMART LRR_typ_2 201 224 IPR003591 -
Phco9g01995 992 SMART LRR_typ_2 561 585 IPR003591 -
Phco9g01995 992 SMART LRR_typ_2 369 393 IPR003591 -
Phco9g01995 992 SMART LRR_typ_2 537 560 IPR003591 -
Phco9g01995 992 FunFam Leucine-rich repeat receptor protein kinase EMS1 196 292 - -
Phco9g01995 992 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 427 990 - -
Phco9g01995 992 Gene3D Ribonuclease Inhibitor 38 197 IPR032675 -
Phco9g01995 992 Pfam Protein kinase domain 761 937 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco9g01995 992 FunFam Leucine-rich repeat receptor protein kinase MSP1 722 838 - -
Phco9g01995 992 ProSiteProfiles Leucine-rich repeat profile. 131 153 IPR001611 GO:0005515
Phco9g01995 992 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 293 390 - -
Phco9g01995 992 SUPERFAMILY L domain-like 439 660 - -
Phco9g01995 992 ProSiteProfiles Leucine-rich repeat profile. 611 633 IPR001611 GO:0005515
Phco9g01995 992 ProSitePatterns Tyrosine protein kinases specific active-site signature. 884 896 IPR008266 GO:0004672|GO:0006468
Phco9g01995 992 Gene3D Transferase(Phosphotransferase) domain 1 839 992 - -
Phco9g01995 992 FunFam Nuclear pore complex protein NUP107 39 195 - -
Phco9g01995 992 SMART LRR_sd22_2 609 631 - -
Phco9g01995 992 SMART LRR_sd22_2 297 323 - -
Phco9g01995 992 SMART LRR_sd22_2 129 152 - -
Phco9g01995 992 SMART LRR_sd22_2 201 227 - -
Phco9g01995 992 SMART LRR_sd22_2 345 374 - -
Phco9g01995 992 Pfam Leucine Rich Repeat 131 153 IPR001611 GO:0005515
Phco9g01995 992 PRINTS Leucine-rich repeat signature 132 145 - -
Phco9g01995 992 PRINTS Leucine-rich repeat signature 609 622 - -
Phco9g01995 992 Gene3D Phosphorylase Kinase; domain 1 720 838 - -
Phco9g01995 992 SUPERFAMILY Protein kinase-like (PK-like) 742 989 IPR011009 -
Phco9g01995 992 FunFam Uncharacterized protein 391 688 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g01995 Phco-Chr9 44913733 44916981 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Phco9g01995 Pkinase 9.1e-35 CL0016