Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g01994 ATGGTGTTGTTATTTCCAACGTTTCAGTCCATGAAGCTCCTATCATTATGGCTGCTTCTACTTGTAATGGCAAATTCTGTCCATGCAGCACTGTCTTCCTCACTCTCATCACTTCAACACACAGAAGCAAACGCTCTGTTGAAGTGGAAAGCAAGCCTTGACAACCCAAGTCAGACATTGCTATCTTCATGGCATGGCAACAGTTCATGCAACTGGCTTGGAATTTCTTGTGACTACTCAGGATCAGTCTCCAACATAAATCTTACAAACATTGGATTATCTGGTACGCTTCAAACTCTCAATTTTTCAACACTTCCAAACATCCTCACTCTAGATATCAGTCTTAACTCCTTCAGTGGATGCATTCCTCCTCAAATTGGAGTGTTATCCAAACTCACTCATCTTGATTTGAGTCACAATCATCTCACTGGACCAATTCCTTCTGAAATAACTCACTTGGTCAGTCTTGACATTTTATATCTGGCAAATAATGTTTTCAATGGTTCCATTCCTGAAGAAATAGGTGAATTAAGGAATTTGAGAGAGATTAGCATTGTATCTGCCATTCTCACAGGGACAATCCCAAATTCTATTGGAAAGCTATCATTCTTGTCAAATCTTTATTTGGGGAATTGCAGTCTCAGTGGATCTATTCCAAAATCTATTGGAAATTTGAGCAGTCTGTTAAGTCTAGATTTTTCCTTGAACAACCTTTACGGACTTATTCCTCACGAAATTGGGAACTTGTCAAACTTACAGATTTTGGCGGTTGGAGGTAATAACTTACATGGTTCTATTCCTCACGAAATAGGTAAGTTGCGGAACCTAAATGCTATATATATGAATGAAAACAGATTATCTAGCAATATTCCCGTGGAAATTGGGAAGTTGGTGAACTTGAGCAGGTTATGGGTTTTCAATAATAATCTTTCGGGTTCTATTCCTCAAGAAATTGGAATGATGACAAATTTGGAAGAACTTGATTTGTCCAAAAACTCTTTGTCAGGTACAATCCCTTTTACAATTGGAAATTTGAGCAAGTTAGTCTATTTGTACATGTATGACAACCATCTATCTGGATCTATTCCTAATGAAGTGGGAAAACTCCATTTTCTTAAGACGATCCAATTGTTACACAATAATCTTTCTGGCTCAATTCCATCTTCCATCGGTAACTTGGTTAATTTAGAATCTATTTTCCTTCAAGGAAACAAACTCTCCGGAACAATTCCTTCAACTATTGGTCACTTGACGAAGCTCACCGCACTTGATTTGTCCCAAAACTCATTGTCAGATACAATCCCCTCTACAATTGGAAATTTGACAAAGCTCACCACACTTGATTTGTCCCAAAACTCTTTGTCAGGTACAATCCCCTCTACAATTGGAAATTTGATAAAGCTCACTACACTTGAATTGTCCCTTAACTCTTTGACAGGTACAATCCCCTCTACAATTGGAAATTTGACAAATCTCACGAACCTTATTTTATTGTCAAATAAGCTTGGTGGATTCATTCCAATGGAAATGAATATGCTACACAACCTCGAAATTTTGCAATTATATGACAATAATTTCATTGGTCATTTGCCTCACAACATTTGCTACAGTGGAAAGTTGACAAAATTGAGTGCTAATAGAAACTATTTCACAGGTCCATTACCTAAGAGTTTGAAGAATTGCTCCAATCTCATAAGAGTTGTGCTACAACAAAACAATTTAACAGGAAATATAACAGAGGATTTAGGTGTATATCCAATTTTGGATTACATAGACCTGAGTGAAAACAACTTTTATGGCCATCTTTCCCCAAATTGGGGAAAATGCCATAATCTCACGAGTCTCAAAATCTCCAACAACAATTTATCAGGTAGCATTCCAGCAGAACTAAGTCAAGCAACCAATTTACATGTACTTCAATTGTCTTCAAATCACCTCACAGGAAACATTCCTGAAGATTTAGGTAATTTGACCTACTTGATCAAGCTCTCTCTCAATATTAATAATCTTTCAGGAAATGTCCCTAAAAAGATTGCATCATTGCAAAGTCTTGACACCTTAGAGCTCGGAGCAAATAGCTTTTCTGGCTTAATTCCAAATCAACTTGGCAATTTGGTCAATTTATTACATTTGAATTTAAGCCAAAATAAGTTCAGGGAAAATATTCCATCCGAGTTTGGTAAATTAAAATATCTTCGAAGTCTTGATCTGAGCATGAACATTTTGAGTGGAAAAATACCACCAATGTTGGGAGAGTTGAAAAGATTAGAAACATTAAATCTCTCACACAATCATCTTTCAGGCGATCTCTCCAGCCTTGATGACATGATAAGCTTGACATTTGTTGATATATCATACAACCAATTACAGGGTCCACTTCCAGACATTCCAGGCTTCCATATGGCTACCATTGAAGCATTGAGAAATAATAAAGGCTTGTGTGGTAATGTCTCAGGCTTGGAACCATGCCCAACATCACGTGACAAATCTCAAAATCATAATAATAACAATGTCATATTGGTAATTTTACCCACTAGTTTGGGCATTTTCATGCTAGGATTATTTGTCTTTGGAGTCTCATATCATCTTTGTAGAAGGTCAAAGACAAAAGAGCATCCAGATGTAGAATCATCAGGCCAAAATCTTTTTGAGATATGGAGTTTTGATGGAAAGATGGTGTATGAGAACATAATTGAAGCCACAGAAGAGTTTGACAATAAACATCTCATTGGAGTTGGAGGACAAGGAAGTGTTTACAAAGCTGAACTGCAAACAAATCAAATTGTTGCTGTTAAGAAATTCCATTCAGTACAAAATGGTGAAGGGTCTAGTGTTAAAGCTTTCAAAAGTGAAATTCAAGCTTTGACAGAGATTCGACATCGTAACATTGTGAGGCTATATGGGTTTTGTTCTCATTCCCGATTCTCATTTTTGGTGTATGAGTTCTTGGAAAAGGGGAGCATAGATAATATTTTAAAAGACGATGAACAGGCAATTGCATTTAATTGGAATATGAGGATTGATGCCATTAAAGGTGTAGCAAATGCTTTATGCTATATGCATCATGATTGTTCACCCCCAATCGTTCATCGAGATATATCAAGCAAGAATGTTCTTTTGAATTTGGAGTATGTGGCTCATCTCTCAGATTTTGGAACAGCCAAGCTTCTTAATCCTAATTCAACCAATTGGACCTCATTTGTGGGAACTTTTGGATATGCTGCTCCAGGTTAA 3234 0.368 MVLLFPTFQSMKLLSLWLLLLVMANSVHAALSSSLSSLQHTEANALLKWKASLDNPSQTLLSSWHGNSSCNWLGISCDYSGSVSNINLTNIGLSGTLQTLNFSTLPNILTLDISLNSFSGCIPPQIGVLSKLTHLDLSHNHLTGPIPSEITHLVSLDILYLANNVFNGSIPEEIGELRNLREISIVSAILTGTIPNSIGKLSFLSNLYLGNCSLSGSIPKSIGNLSSLLSLDFSLNNLYGLIPHEIGNLSNLQILAVGGNNLHGSIPHEIGKLRNLNAIYMNENRLSSNIPVEIGKLVNLSRLWVFNNNLSGSIPQEIGMMTNLEELDLSKNSLSGTIPFTIGNLSKLVYLYMYDNHLSGSIPNEVGKLHFLKTIQLLHNNLSGSIPSSIGNLVNLESIFLQGNKLSGTIPSTIGHLTKLTALDLSQNSLSDTIPSTIGNLTKLTTLDLSQNSLSGTIPSTIGNLIKLTTLELSLNSLTGTIPSTIGNLTNLTNLILLSNKLGGFIPMEMNMLHNLEILQLYDNNFIGHLPHNICYSGKLTKLSANRNYFTGPLPKSLKNCSNLIRVVLQQNNLTGNITEDLGVYPILDYIDLSENNFYGHLSPNWGKCHNLTSLKISNNNLSGSIPAELSQATNLHVLQLSSNHLTGNIPEDLGNLTYLIKLSLNINNLSGNVPKKIASLQSLDTLELGANSFSGLIPNQLGNLVNLLHLNLSQNKFRENIPSEFGKLKYLRSLDLSMNILSGKIPPMLGELKRLETLNLSHNHLSGDLSSLDDMISLTFVDISYNQLQGPLPDIPGFHMATIEALRNNKGLCGNVSGLEPCPTSRDKSQNHNNNNVILVILPTSLGIFMLGLFVFGVSYHLCRRSKTKEHPDVESSGQNLFEIWSFDGKMVYENIIEATEEFDNKHLIGVGGQGSVYKAELQTNQIVAVKKFHSVQNGEGSSVKAFKSEIQALTEIRHRNIVRLYGFCSHSRFSFLVYEFLEKGSIDNILKDDEQAIAFNWNMRIDAIKGVANALCYMHHDCSPPIVHRDISSKNVLLNLEYVAHLSDFGTAKLLNPNSTNWTSFVGTFGYAAPG 1077
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g01994 1077 Gene3D Ribonuclease Inhibitor 38 185 IPR032675 -
Phco9g01994 1077 Gene3D Ribonuclease Inhibitor 289 385 IPR032675 -
Phco9g01994 1077 Gene3D Ribonuclease Inhibitor 186 288 IPR032675 -
Phco9g01994 1077 Pfam Leucine rich repeat N-terminal domain 41 78 IPR013210 -
Phco9g01994 1077 FunFam Nuclear pore complex protein NUP107 39 196 - -
Phco9g01994 1077 SMART LRR_sd22_2 249 278 - -
Phco9g01994 1077 SMART LRR_sd22_2 321 347 - -
Phco9g01994 1077 SMART LRR_sd22_2 753 775 - -
Phco9g01994 1077 SMART LRR_sd22_2 441 467 - -
Phco9g01994 1077 SMART LRR_sd22_2 417 432 - -
Phco9g01994 1077 SMART LRR_sd22_2 393 408 - -
Phco9g01994 1077 SMART LRR_sd22_2 129 152 - -
Phco9g01994 1077 Gene3D Ribonuclease Inhibitor 386 485 IPR032675 -
Phco9g01994 1077 FunFam Probable leucine-rich repeat receptor-like protein kinase At5g63930 240 338 - -
Phco9g01994 1077 PRINTS Leucine-rich repeat signature 753 766 - -
Phco9g01994 1077 PRINTS Leucine-rich repeat signature 444 457 - -
Phco9g01994 1077 Gene3D Transferase(Phosphotransferase) domain 1 983 1077 - -
Phco9g01994 1077 ProSiteProfiles Protein kinase domain profile. 904 1077 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco9g01994 1077 FunFam MDIS1-interacting receptor like kinase 2 isoform A 435 534 - -
Phco9g01994 1077 SUPERFAMILY Protein kinase-like (PK-like) 886 1076 IPR011009 -
Phco9g01994 1077 Pfam Leucine Rich Repeat 131 153 IPR001611 GO:0005515
Phco9g01994 1077 Pfam Leucine Rich Repeat 323 345 IPR001611 GO:0005515
Phco9g01994 1077 ProSitePatterns Tyrosine protein kinases specific active-site signature. 1028 1040 IPR008266 GO:0004672|GO:0006468
Phco9g01994 1077 PANTHER UNNAMED PRODUCT 432 1076 - -
Phco9g01994 1077 SUPERFAMILY RNI-like 507 795 - -
Phco9g01994 1077 ProSiteProfiles Leucine-rich repeat profile. 131 153 IPR001611 GO:0005515
Phco9g01994 1077 Pfam Protein kinase domain 905 1076 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco9g01994 1077 SUPERFAMILY RNI-like 206 591 - -
Phco9g01994 1077 SMART LRR_typ_2 513 537 IPR003591 -
Phco9g01994 1077 SMART LRR_typ_2 609 633 IPR003591 -
Phco9g01994 1077 SMART LRR_typ_2 153 177 IPR003591 -
Phco9g01994 1077 SMART LRR_typ_2 441 465 IPR003591 -
Phco9g01994 1077 SMART LRR_typ_2 634 657 IPR003591 -
Phco9g01994 1077 SMART LRR_typ_2 705 729 IPR003591 -
Phco9g01994 1077 SMART LRR_typ_2 345 369 IPR003591 -
Phco9g01994 1077 SMART LRR_typ_2 681 704 IPR003591 -
Phco9g01994 1077 SMART LRR_typ_2 249 273 IPR003591 -
Phco9g01994 1077 SMART LRR_typ_2 753 780 IPR003591 -
Phco9g01994 1077 SMART LRR_typ_2 417 440 IPR003591 -
Phco9g01994 1077 SMART LRR_typ_2 129 152 IPR003591 -
Phco9g01994 1077 SMART LRR_typ_2 321 344 IPR003591 -
Phco9g01994 1077 SMART LRR_typ_2 393 416 IPR003591 -
Phco9g01994 1077 FunFam Leucine-rich repeat receptor protein kinase MSP1 866 982 - -
Phco9g01994 1077 ProSiteProfiles Leucine-rich repeat profile. 755 777 IPR001611 GO:0005515
Phco9g01994 1077 Gene3D Ribonuclease Inhibitor 486 832 IPR032675 -
Phco9g01994 1077 SUPERFAMILY L domain-like 68 262 - -
Phco9g01994 1077 Pfam Leucine rich repeat 395 454 IPR001611 GO:0005515
Phco9g01994 1077 Pfam Leucine rich repeat 683 740 IPR001611 GO:0005515
Phco9g01994 1077 Gene3D Phosphorylase Kinase; domain 1 864 982 - -
Phco9g01994 1077 FunFam Probable leucine-rich repeat receptor-like protein kinase At5g63930 339 434 - -
Phco9g01994 1077 FunFam Uncharacterized protein 535 832 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g01994 Phco-Chr9 44898791 44902024 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Phco9g01994 Pkinase 3.5e-33 CL0016