Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g01968 ATGGGAAATTCGCACACCAAGAGACGTGATATTCTCTCTCCGGCGTTATCCAGAAACTTGTCACCGCCACCACGACCGTCGTCGTCACCGGAATCATCCCGAAAACCACCGCGAGAGCCACCACTGGCGCAACACCATGGCTCTGGAAAATTATCTGCGAAAGAGAAATACGCTCTGATTCCTGATAACTTCACTTCGCTTGAACAGGTTACAGCTGCCTTGAGGAACGAAGGTTTAGAATCATCAAATCTTGTCCTTGGAATTGATTTTACCAAAAGCAATGAATGGACTGGAAGTGTCTCATTCAACAATAAAAGTCTACATGCTATTGGAAATACACCTAACCCCTATGAGAAAGCCATCACTATTATTGGCAAAACTCTGGCTCCCTTTGATGATGACAACTTGATTCCTTGTTTTGGCTTTGGTGATGCCACCACTCATGATCGAGAAGTGTTTAGCTTTCACAGTGATCATTCATCTTGCCATGGATTTGAGGAGGTTTTGGCTTGCTATCAGAAAATTGTTCCAAACTTAAGACTTTCAGGACCAACATCTTACGCTCCAGTGATTGAGGCTGCAATGGACATAGTTGAGCAAAGTCATGGTCAATTCCATGTGTTAGTTATTGTTGCAGATGGCCAGGTTACAACAAGTGCTGCCTCTGAAGATGGAGAACTAAGTCCACAAGAAGCAAGGACTATCAAAGCAATAGCTGATGCAAGTTCATATGCCATGTCTATTATTCTGGTTGGAGTTGGTGATGGACCTTGGGATGACATGAAGAAGTTTGACGACAAGATACCAGCTCGCGAATTTGACAATTTTCAGTTTGTTAACTTCACTGACATAATGTCTAAGAAATCAAGCTCCTCTGAAAAAGAAGCTGCGTTTGCTCTGGCTGCACTAATGGAGATACCTTTCCAGTATAAAGCAGCCATTGAACTAGGACTACTTGGTCGAGTAACAGGAAGGGTAAATAAAATTGTTCCAAGACCTCCTCCAGCTCCTTATTCCAGGCTTGTGCCACCAGCTCGTGTTCTCAGCAATATGCCAACTTTCATGGATGATGAGAGAAATCAAATGGCATGTGCTATTTGTCTCACAAGTAGAAAGGATTTGGCCTTTGGATGTGGTCACATGACTTGTAGAGACTGTGGGTCCAGGTTAACTAACTGTCCAATATGCCGTCAGAGGATCACCAATCGTCTGAGGGTGTTTTCTAGCTGA 1230 0.4366 MGNSHTKRRDILSPALSRNLSPPPRPSSSPESSRKPPREPPLAQHHGSGKLSAKEKYALIPDNFTSLEQVTAALRNEGLESSNLVLGIDFTKSNEWTGSVSFNNKSLHAIGNTPNPYEKAITIIGKTLAPFDDDNLIPCFGFGDATTHDREVFSFHSDHSSCHGFEEVLACYQKIVPNLRLSGPTSYAPVIEAAMDIVEQSHGQFHVLVIVADGQVTTSAASEDGELSPQEARTIKAIADASSYAMSIILVGVGDGPWDDMKKFDDKIPAREFDNFQFVNFTDIMSKKSSSSEKEAAFALAALMEIPFQYKAAIELGLLGRVTGRVNKIVPRPPPAPYSRLVPPARVLSNMPTFMDDERNQMACAICLTSRKDLAFGCGHMTCRDCGSRLTNCPICRQRITNRLRVFSS 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g01968 409 ProSiteProfiles Zinc finger RING-type profile. 364 397 IPR001841 -
Phco9g01968 409 SUPERFAMILY vWA-like 82 264 IPR036465 -
Phco9g01968 409 Pfam Zinc finger, C3HC4 type (RING finger) 361 401 - -
Phco9g01968 409 SMART VWA_4 81 284 IPR002035 -
Phco9g01968 409 PANTHER COPINE FAMILY PROTEIN 1 50 384 - -
Phco9g01968 409 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 353 409 IPR013083 -
Phco9g01968 409 Pfam Copine 106 319 IPR010734 -
Phco9g01968 409 SMART ring_2 364 396 IPR001841 -
Phco9g01968 409 Gene3D von Willebrand factor, type A domain 80 297 IPR036465 -
Phco9g01968 409 MobiDBLite consensus disorder prediction 1 51 - -
Phco9g01968 409 MobiDBLite consensus disorder prediction 19 37 - -
Phco9g01968 409 SUPERFAMILY RING/U-box 358 403 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g01968 Phco-Chr9 44556176 44567244 Dispersed/Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco9g01968 9 44556176 44567244 Phco9g01968 9 44556176 44567244 ECH
Phco10g00481 10 4697082 4712898 Phco9g01968 9 44556176 44567244 PCT