Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g01931 ATGATGGAACAGCCTAGATTCTACAAACACCTTCAATGCAATACCATGCAACCTAGAAATGAGGAGTTCCAGCCTGGATCTCAATCAATAATTCAGGACCATATGGATGGCATGCATTCTATTAGACGACCATCTGACTATAGCACATCAGATGTTAAACCGGTACTTAATTATTCAATACAGACGGGTGAGGAATTTGCTCTTGAATTCATGCGAGATAGGGTGAATCTCAGGAAGCCCATATTTTCAAATGTTAGTGATTCCACTTCCAATTATGCAACTGGTTGCATGGAACTGAAAGGCGTCTTAGGCATCAGCCATGCAGCTTCTGAAAGTGGATCAGACATTTCTATGCTATCCAAAGCTGAGAAAGGTCCAACAGAGTTTAACAGACAGGGTACATCATTACATGGAGACAGAAGCAATTATGGGTCAATTCGATCAATCCCAAGAGTTTCATTGAATCAGGAGAATAGTCGATTTGTTCGTGGGTATGGCTCTTCTGTTGGTTCTGACAGCTCATCAATGATGAAGTGTCTTTGTAGCTTTGGGGGCAGAATATTGCCACGACCAAGTGATGGGAAGCTAAGGTATGTTGGAGGTCAAACTCGTATTCTTCGTCTAAGAAAGGACATATCTTGGCAGGAGCTTATGCAAAAAGCATTGTTAATCTATAATCTGGTTCATGTACTAAAATATCAACTTCCTGGGGAAGATCTCGATGCATTGGTATCAGTATCGTCTGATGAGGATTTGCAGAATATGATGGAGGAATGTAATCTTCTAGAAGATAGAGAGCGCTCGAAAAAGCTTAGGCTGTTTTTGTTCTCAATGAGTGATTTGGAAGATGCTCAATTTTCTCTAAGCAGCATTAGTGATGACTCTGAGGCCCAATATGTTGTTGCTGTTAATGGCATGGACTTTGGATCAATAAACAGCTCAACCCCACTTGGTGTCAGTTTTTCAGCAGATGATCTGCATGAATTGGATAGGCAAACCTCACATAGAGAGACTAACAGAGCTGCTGCAGAATCTATCGGGGCCAGCAATGCTCCCTTGACTAACAAAACTGATCCATCATTGACTATTCATTCTTCACAAGCAGTTCTACCAAATGCCTCAAATTCTTATGAAATTGATCAACTATCTTATGGTGACCAAATGGCTCAATTTGGGGAATATAGTCATCAATATTTTGTTCACCATGGCCTTAATTCCACTCATAGCCCTGTTGGAGAGACTCCTATTCCTGTGGCTCCTCATCTACTTAACAATCAACAAGGGGTTCAGAATGAGGACCATCTATCTAGTGGATTACAAATTCAAAATTCTCAGTTATCTGCAATGCATGTGAAAAAGATAAGTGATAATTTAGTTAAGCAAGGAAGTGACTCTGAAAAAGTTTTATCCTCAGAAACTACATCTCCAGCTCCCTTACAAACCTATGATAGTTGCTTAAAAAGTAATTTTCCTGAAGCATCGGTTGTAGTTACCATGGCTGAGGGACATCTACCTTCGTTGCCTTCAACAAAAAAGGTGCAGCACAAGGATTATGAAGAGTTCTCTTCTACTTCTAGCAGTGCATTTGTTCCTGCTTATGTTGATTCCCATGCCAATGCAATTGATTTGAGTTGTCTTCATCCTCCACCACTTCCTGAAAGAGTTTATTATTCAGAAAGAACTCCAAGGGAGCAAGTTGAGTTGCTGAATCGTTCCTCAAAGTCGGATGACACACATAGTTCTCAAATTCATGTGTCAGATTTACTTTCTGATGTCAACCCAGAGGACCCAGTAACAGAATCTGGCGACAACTTGCATCCAACTGATGAGTTGGGTAATGCAGAAAAGCCCTTGAATGCAGATGGCCATACCACTGACAATGGGTTTTCCAAAAATCAAATGAGCAAACCGTTGCCTGAGACAAACAGTCTGATTAAGTCAAAACTATCTGAGCATGCAGACCCTGAGTTGAAGCCAGTGTTGTCAAGCAATGAAGGAACTAAAGATGTTGAAACTGAAAATTATCATAAAGATAGCCAAACCAAGCCTTTGCTTGATGAAACTGAAACCAAGACCAAAACCAAAGATGGTAAATCAGATCTTACTGCTTTGCATCATGTTTCCTCTGCTAAGCGTCTTGATGATCTAGCATCCAATCTTCCAGAGATTGATTGGGGTGAAGCCTCAGGGAAGGAATCTAGTGATGGTTGTATGGTACAAGAACTACCTGTATCTGTGACTGGGAACATAACCAAAGATGTTTATCAAGATTTCCCCCAAAGTGTTGTTTCCAAACAATCTCAAGGGGACATTCTTATTGACATTGATGATCGATTCCCCCGAGAATTGCTTTCAGATATGTTTTCTAAAGCAATACATGGAGAAGATCCCTCCAGTCTGCACCCACTGTCCGGAGATGGAGTAGGCTTAAGCATAAATATGGAAAATCATGAGCCCAAAAGATGGTCATATTTTCATAAATTAGCACAAGGGCTTGATAATGTCTCTCTTATTGATCAAGATCATCTTGGTTTTTCACCTGGGATAGGAAAAGCAGAAGATAATAGAACTCATCATGTTATGCCGCTAACAACTGATGGAGATCCCCTACATCATGAAGATTCCCATCTCAATTTTAATGAAGAAAATCCCCAGGACTTACATATAAGGATGGAAACTGAAACTACCATTCTGAAGTCTAATTATAATCAATCCCAACTTAAGGACAATGAGAGTATGCAGTTTGATGCTATGATGGAAAATTTAAGAATGCAAGGGTCAGAGTTTGAGGACGGCAAATTTGATGTGAAAAATAACAACCTACCTCCACCCCTTGATACTGTGCAGGTCATTAAGAATGAAGATCTTGAAGAGCTGCGAGAACTAGGTTCTGGTACCTTTGGGACCGTGTATCATGGAAAATGGAGAGGAACAGATGTTGCTATTAAAAGAATAAAGAAGAGCTGCTTCACGGGTCGGTCATCTGAACAAGAGAGATTGACTGTAGAGTTTTGGCGGGAAGCTGACATTCTTTCCAAGCTTCATCATCCAAATGTGGTTGCATTTTATGGTGTGGTACAGCACGGACCAGGTGGTACAATGGCCACTGTGGCAGAATATATGGTGGATGGTTCTCTTAGGCATGTATTACTTCGCAAGGATAGGTATCTTGATCGTCGCAAGAGGCTGATAATTGCAATGGATGCAGCTTTTGGAATGGAATATTTGCACTCAAAAAACATTGTGCATTTTGACTTAAAATGTGACAATTTGCTTGTAAACTTGAAAGATCCTTTACGTCCAATATGCAAGGTTGGTGATTTTGGCTTATCAAAAATTAAGCGAAATACTTTGGTTACTGGTGGTGTGCGTGGGACATTACCTTGGATGGCACCAGAGCTTCTGAATGGCAGCAGCAATAAGGTCTCAGAAAAGGTTGATGTGTTCTCCTTTGGCATAGTATTGTGGGAAATTCTTACTGGTGAGGAGCCATATGCCAATATGCACTATGGTGCAATTATAGGTGGGATTGTAAATAACACATTAAGGCCAACCATCCCAAGTAACTGTGATCCTGAATGGAGAACACTAATGGAACAATGTTGGGCTCCCAATCCTGCAGTCAGACCATCTTTCACAGAAATCGCCAGTCGTTTGCGCATAATGTCTGCAGCAGCAAACCAAACCAAAACACAGGGCCATAAAACATCTAAATGA 3717 0.4076 MMEQPRFYKHLQCNTMQPRNEEFQPGSQSIIQDHMDGMHSIRRPSDYSTSDVKPVLNYSIQTGEEFALEFMRDRVNLRKPIFSNVSDSTSNYATGCMELKGVLGISHAASESGSDISMLSKAEKGPTEFNRQGTSLHGDRSNYGSIRSIPRVSLNQENSRFVRGYGSSVGSDSSSMMKCLCSFGGRILPRPSDGKLRYVGGQTRILRLRKDISWQELMQKALLIYNLVHVLKYQLPGEDLDALVSVSSDEDLQNMMEECNLLEDRERSKKLRLFLFSMSDLEDAQFSLSSISDDSEAQYVVAVNGMDFGSINSSTPLGVSFSADDLHELDRQTSHRETNRAAAESIGASNAPLTNKTDPSLTIHSSQAVLPNASNSYEIDQLSYGDQMAQFGEYSHQYFVHHGLNSTHSPVGETPIPVAPHLLNNQQGVQNEDHLSSGLQIQNSQLSAMHVKKISDNLVKQGSDSEKVLSSETTSPAPLQTYDSCLKSNFPEASVVVTMAEGHLPSLPSTKKVQHKDYEEFSSTSSSAFVPAYVDSHANAIDLSCLHPPPLPERVYYSERTPREQVELLNRSSKSDDTHSSQIHVSDLLSDVNPEDPVTESGDNLHPTDELGNAEKPLNADGHTTDNGFSKNQMSKPLPETNSLIKSKLSEHADPELKPVLSSNEGTKDVETENYHKDSQTKPLLDETETKTKTKDGKSDLTALHHVSSAKRLDDLASNLPEIDWGEASGKESSDGCMVQELPVSVTGNITKDVYQDFPQSVVSKQSQGDILIDIDDRFPRELLSDMFSKAIHGEDPSSLHPLSGDGVGLSINMENHEPKRWSYFHKLAQGLDNVSLIDQDHLGFSPGIGKAEDNRTHHVMPLTTDGDPLHHEDSHLNFNEENPQDLHIRMETETTILKSNYNQSQLKDNESMQFDAMMENLRMQGSEFEDGKFDVKNNNLPPPLDTVQVIKNEDLEELRELGSGTFGTVYHGKWRGTDVAIKRIKKSCFTGRSSEQERLTVEFWREADILSKLHHPNVVAFYGVVQHGPGGTMATVAEYMVDGSLRHVLLRKDRYLDRRKRLIIAMDAAFGMEYLHSKNIVHFDLKCDNLLVNLKDPLRPICKVGDFGLSKIKRNTLVTGGVRGTLPWMAPELLNGSSNKVSEKVDVFSFGIVLWEILTGEEPYANMHYGAIIGGIVNNTLRPTIPSNCDPEWRTLMEQCWAPNPAVRPSFTEIASRLRIMSAAANQTKTQGHKTSK 1238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g01931 1238 Gene3D Phosphorylase Kinase; domain 1 949 1043 - -
Phco9g01931 1238 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 1044 1236 - -
Phco9g01931 1238 SMART serkin_6 956 1222 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco9g01931 1238 SUPERFAMILY CAD & PB1 domains 192 281 - -
Phco9g01931 1238 MobiDBLite consensus disorder prediction 339 360 - -
Phco9g01931 1238 PANTHER SERINE-THREONINE PROTEIN KINASE 221 1220 - -
Phco9g01931 1238 Pfam Protein tyrosine and serine/threonine kinase 957 1219 IPR001245 GO:0004672|GO:0006468
Phco9g01931 1238 Gene3D Transferase(Phosphotransferase) domain 1 1044 1238 - -
Phco9g01931 1238 MobiDBLite consensus disorder prediction 567 581 - -
Phco9g01931 1238 CDD PB1_UP2 180 276 - -
Phco9g01931 1238 MobiDBLite consensus disorder prediction 669 698 - -
Phco9g01931 1238 ProSiteProfiles Protein kinase domain profile. 956 1221 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco9g01931 1238 ProSitePatterns Protein kinases ATP-binding region signature. 962 987 IPR017441 GO:0005524
Phco9g01931 1238 SUPERFAMILY Protein kinase-like (PK-like) 942 1219 IPR011009 -
Phco9g01931 1238 Gene3D - 195 278 - -
Phco9g01931 1238 SMART PB1_new 191 278 IPR000270 GO:0005515
Phco9g01931 1238 MobiDBLite consensus disorder prediction 331 360 - -
Phco9g01931 1238 CDD STKc_MAP3K-like 962 1219 - -
Phco9g01931 1238 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 949 1043 - -
Phco9g01931 1238 PRINTS Tyrosine kinase catalytic domain signature 1146 1168 IPR001245 GO:0004672|GO:0006468
Phco9g01931 1238 PRINTS Tyrosine kinase catalytic domain signature 1038 1051 IPR001245 GO:0004672|GO:0006468
Phco9g01931 1238 PRINTS Tyrosine kinase catalytic domain signature 1190 1212 IPR001245 GO:0004672|GO:0006468
Phco9g01931 1238 PRINTS Tyrosine kinase catalytic domain signature 1075 1093 IPR001245 GO:0004672|GO:0006468
Phco9g01931 1238 MobiDBLite consensus disorder prediction 567 698 - -
Phco9g01931 1238 MobiDBLite consensus disorder prediction 623 646 - -
Phco9g01931 1238 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 196 278 - -
Phco9g01931 1238 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1081 1093 IPR008271 GO:0004672|GO:0006468
Phco9g01931 1238 Pfam PB1 domain 193 276 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g01931 Phco-Chr9 44183029 44194441 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-6 Phco9g01931 PK_Tyr_Ser-Thr 3.2e-62 CL0016