Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g01895 ATGGGATGGATGTCACAAGGTTTTGCTTTTGCACTTGTTGCTGTGTTCTTCTGTCACTTCAGTTGCTTTCTTAGCTTTGCACAAACTCAATCTGCAAACGCCACCACTGACCCTTCTGAAGCAAGAACTATAAATTCAATCTTCAGCAAATGGGGTAAATCCGCAGACTCAACTATATGGAATATAAGCGGTGAATTGTGCAGTGGAAGAGCTATTGATAGTACCTCCACCCCGGAATCTTACAACCCATTCATCAGATGTGACTGTTCCTTTGACGATGGAACTACTTGCCGCATCACAGCACTGAGGGTCTATGCACTGAACGTGGTTGGTGAAATTCCTGAAGAGCTATGGACTCTCACCTATCTCAACAATTTAAATCTTGCGCAAAATTACTTGACGGGTTCTCTACCTGCAGCTATTGGAAATCTAACTCGTATGCAATACTTGAGCCTTGGAACCAATAATTTATCTGGGGAGCTTCCAAAGGAATTGGGAAATCTTACAGAGTTATTATCACTGAGTTATGCATCAAACAATTTCTCAGGATCTCTCCCATCTGAACTTGGGAAACTCACAAAGTTAAGCCAACTCTACTTTGATAGTTCAGGAATTAGTGGTCCAATTCCGTCCTCATTTGCAGACCTAAGGAGTTTGGAAACAGTATGGGCTTCAGACACGGAACTCACAGGCAATATACCAGACTTCATAGGGAATTGGACTAGGCTTAAAGTCTTGAGGTTTCAAGGCAATTCTTTTAATGGCTCAATACCCTCATCATTTTCCAACTTGACTTCTTTAACAGAATTGAGAATAAGTGGTTTATCTAATGGGAGCTCCTCACTGGAATTTGTACGGAATATGAAATCTTTGAATATCTTAGAATTGAGGAATAACAATATTTCTGGTTCGATTCCATCCTTCATTGGAGAGTTGCACAATTTGACCCAGCTGGATTTAAGCTTCAACAACATCGAAGGACAAATTCCCGGATCAATTTTCAATTTGAGTTCGCTCTCTACCTTGTTTCTTGGAAATAATAAGCTAAATGGCACCCTTCCAACGCAGAAAAGTTCATCATTTCAATATATAGACTTGTCATACAATGATCTATCAGGTAGCCTCCCCTCTTGGGTAAACGATGCAGATTTACAACTGAATTTAGTTGTTAACAACTTGACAATAGATGATGATTCAGATACCAGTGGCTTGCCAAATCAGCTCAACTGTCTCCAGAAAAATTTTCCTTGCAATCGAGGTGTTGGAAGATATTCTGACTTTGCAATCAAGTGTGGCGGTTCCCAAATTACGTCCACAGAAGGAATAGTGTATGAAACGGAGAATGAGACACTTGGTCCTTCTACATACTTTGTTACTGATACAAGTAGATGGGCTGCTAGTAATGTTGGATTATTTACGAACAATAACAATCCAGTATTCACAAGTTTTGTGAGTAATCAATTCACTAACACTATGAATTCGGAGCTCTTCCAAACAGCACGACTCTCTCCTTCATCATTGAGATACTATGGCTTGGGGCTGGAAAATGGCTTTTACAACATCACCCTTCAATTTGCAGAAACAGCTATTCTGGATTCTACTACAAGATGGGAAAGTCTTGGGAGACGAGTCTTTGATATATATATTCAGGGGAATCTTGTTTTGAAAGATTTCGACATACAAAAGGAAGCTGGGGGCATCTCATTCAGAGCTGTCCAAAAGCAATTTAGGTTTGAAGTGTCTGAAAACTATCTTGACATCCATCTCTTTTGGGCTGGAAAGGGGACTTGTTGCATACCAGCTCAAGGTACTTATGGGCCCTTGATTCAAGCCATCCATGCTATCCCAGATTTTATACCTAGTGTCAGTAACGAACCTCCAAGCAATAAAACAAATAGAACTGGCCTAATCGTTGGAATTGTTGTTGGAGTTGGAGTTGTCAGCTTCCTATCAGTTTTTGTGACTTTTTGTATCATTCGGAGAAGAAAACGTCAGCATGAGGATGAAGAGCTTTTAGGAATTGATACAAAGCCATACACTTTCAGTTATTCTGAGTTGAAGAATGCTACTAATGACTTTAATATTGAAAATAAGCTTGGAGAGGGAGGTTTTGGACCTGTTTATAAGGGGACACTCAATGATGGAAGAGTTATTGCTGTGAAACAACTGTCAGTAGCATCCCATCAAGGAAAGAGCCAGTTCATAACTGAGATTGCTACTATATCAGCTGTGCAGCATCGTAATCTGGTGAAACTATATGGATGTTGCATTGAGGGAAACAAAAAGCTTCTGGTGTACGAGTATCTGGAGAATAAGAGTCTTGATCAAGGATTATTCAGTAATTCTTTAACACTCAATTGGTCCACACGCTATGATATCTGCTTGGGTGTTGCCAGAGGTTTAGCTTATTTACATGAAGAGTCTCGTCTCCGTATTGTACACCGTGATGTGAAGGCTAGCAATATTTTGCTTGACTATGAGCTTGTCCCCAAAATATCAGATTTTGGGTTGGCCAAATTGTACGATGATAAAAAGACCCACATAAGCACTCGTGTGGCTGGAACAATTGGATATCTTGCACCGGAGTATGCCATGCGTGGACACCTTACAGAGAAAGCAGATATATTTTCATTTGGTGTTGTTGCTCTAGAGTTAGTCAGTGGGAGACCAAATTCTGATTCAAGCTTGGAAGGAGAGAAGGTGTATCTTCTAGAATGGGCTTGGCAGCTTCATGAAAACAACCTCTTAATGGATCTAGTGGACCCTAGAATTTCAGAATCCAATGAGGAAGAAGTAAAACGTGTTGTGGGAATAGCACTTCTGTGCACTCAGACATCACCATCATTAAGACCATCAATGTCCCGTGTGGTGGCAATGCTTTCAGGAGATATTGAAGTGAGCAGTGTCACTTCAAAGCCTGGATACCTTACTGACTGGAAATTTGATGATGTGAGCAGCTTCATGACTGAGAATGCAATCGAAGGATTGAAAACAAGTTACCAGTATTCATCAGGAAGTACCAGCATGGTGGGTGGTGCAGACTTTTCACCAATAAGTGTTACAAAACCGATCCTTGATGATGGTCTTAGTGAGGGTAGGTAA 3102 0.4062 MGWMSQGFAFALVAVFFCHFSCFLSFAQTQSANATTDPSEARTINSIFSKWGKSADSTIWNISGELCSGRAIDSTSTPESYNPFIRCDCSFDDGTTCRITALRVYALNVVGEIPEELWTLTYLNNLNLAQNYLTGSLPAAIGNLTRMQYLSLGTNNLSGELPKELGNLTELLSLSYASNNFSGSLPSELGKLTKLSQLYFDSSGISGPIPSSFADLRSLETVWASDTELTGNIPDFIGNWTRLKVLRFQGNSFNGSIPSSFSNLTSLTELRISGLSNGSSSLEFVRNMKSLNILELRNNNISGSIPSFIGELHNLTQLDLSFNNIEGQIPGSIFNLSSLSTLFLGNNKLNGTLPTQKSSSFQYIDLSYNDLSGSLPSWVNDADLQLNLVVNNLTIDDDSDTSGLPNQLNCLQKNFPCNRGVGRYSDFAIKCGGSQITSTEGIVYETENETLGPSTYFVTDTSRWAASNVGLFTNNNNPVFTSFVSNQFTNTMNSELFQTARLSPSSLRYYGLGLENGFYNITLQFAETAILDSTTRWESLGRRVFDIYIQGNLVLKDFDIQKEAGGISFRAVQKQFRFEVSENYLDIHLFWAGKGTCCIPAQGTYGPLIQAIHAIPDFIPSVSNEPPSNKTNRTGLIVGIVVGVGVVSFLSVFVTFCIIRRRKRQHEDEELLGIDTKPYTFSYSELKNATNDFNIENKLGEGGFGPVYKGTLNDGRVIAVKQLSVASHQGKSQFITEIATISAVQHRNLVKLYGCCIEGNKKLLVYEYLENKSLDQGLFSNSLTLNWSTRYDICLGVARGLAYLHEESRLRIVHRDVKASNILLDYELVPKISDFGLAKLYDDKKTHISTRVAGTIGYLAPEYAMRGHLTEKADIFSFGVVALELVSGRPNSDSSLEGEKVYLLEWAWQLHENNLLMDLVDPRISESNEEEVKRVVGIALLCTQTSPSLRPSMSRVVAMLSGDIEVSSVTSKPGYLTDWKFDDVSSFMTENAIEGLKTSYQYSSGSTSMVGGADFSPISVTKPILDDGLSEGR 1033
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g01895 1033 Gene3D - 426 616 - -
Phco9g01895 1033 FunFam Putative LRR receptor-like serine/threonine-protein kinase 278 401 - -
Phco9g01895 1033 Gene3D Ribonuclease Inhibitor 279 398 IPR032675 -
Phco9g01895 1033 CDD STKc_IRAK 699 960 - -
Phco9g01895 1033 Pfam Leucine rich repeat 290 349 IPR001611 GO:0005515
Phco9g01895 1033 FunFam Leucine-rich repeat receptor-like protein kinase 424 616 - -
Phco9g01895 1033 Pfam Protein tyrosine and serine/threonine kinase 694 960 IPR001245 GO:0004672|GO:0006468
Phco9g01895 1033 ProSiteProfiles Protein kinase domain profile. 693 966 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco9g01895 1033 FunFam Putative LRR receptor-like serine/threonine-protein kinase 769 972 - -
Phco9g01895 1033 FunFam Leucine-rich repeat transmembrane protein kinase 38 277 - -
Phco9g01895 1033 Pfam Malectin domain 426 612 IPR021720 -
Phco9g01895 1033 FunFam Leucine-rich repeat receptor-like protein kinase 662 768 - -
Phco9g01895 1033 SUPERFAMILY Protein kinase-like (PK-like) 676 979 IPR011009 -
Phco9g01895 1033 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 21 991 - -
Phco9g01895 1033 ProSitePatterns Serine/Threonine protein kinases active-site signature. 812 824 IPR008271 GO:0004672|GO:0006468
Phco9g01895 1033 SMART serkin_6 693 960 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco9g01895 1033 Gene3D Ribonuclease Inhibitor 37 278 IPR032675 -
Phco9g01895 1033 Gene3D Phosphorylase Kinase; domain 1 654 768 - -
Phco9g01895 1033 Gene3D Transferase(Phosphotransferase) domain 1 769 972 - -
Phco9g01895 1033 ProSiteProfiles Leucine-rich repeat profile. 314 336 IPR001611 GO:0005515
Phco9g01895 1033 SUPERFAMILY L domain-like 89 398 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g01895 Phco-Chr9 43571863 43589033 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Phco9g01895 PK_Tyr_Ser-Thr 5.4e-48 CL0016