Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g01892 ATGACTTGCTTCCCATTCTCATTTGGTAGGAAATTGCCTTCTGCACCAAAACACTATCCAGATATTGATGAAGAACTCTCAGGCATTCAAAATGTAAGAATCTTTACCTACAAAGAACTAAAAGTTGCGTCTGACAATTTCAGTCAGTCCAATAAAATTGGGCAGGGTGGCTTTGGTTCTGTTTATAAGGGATTACTAAAAGATGGGAAACTAGCTGCTATAAAAGTTCTTTCAGAAGAATCAACTCAAGGGGTGAAAGAATTTATGACAGAGATTAATGTGATCTCAGAAATAGAGCATGAAAATTTGGTTAAGCTATATGGTTGTTGTGTGGAAGGGAAAAACCGAATATTAGTCTACAATTTTCTTGAGAACAATAGCCTTGCACAAACCCTTTTAGGTTCAGGTCACAGTAGCAATACTTTTGATTGGAAAACAAGATCTAAGATTTGCATTGGGATTGCACGTGGGCTCTCCTATCTACATGAAGAAGTAAAACCACATATTGTTCATAGGGATATAAAAGCAAGCAATATTCTCCTTGACAAAAACTTTACACCTAAGATTTCAGATTTTGGTCTTGCAAAGCTTATTCCATCATACATGACTCATGTCAGCACTCGTGTGGCCGGAACAATAGGTTATTTGGCACCAGAGTATGCATTAAGGGGGCACCTGACACGTAAAGCAGATATTTACAGCTTTGGTGTACTCCTTGTGGAGATAGTGAGTGGAAGATGTCACACTAATACACGATTACCGATAGGAGAGCAGTTTCTTTTAGAAACGACATGGGAGCTTTATAAGCAAAGGGAACTGGTAGGGCTTGTAGATGCATCCCTAGATGGGTATTTCGATGCCGAGGAGGCCTGTACATTTCTGAAGGTTGGACTTCTCTGCACTCAGGACACATCCAAACTCCGGCCACCAATGTCTTCTGTGGTGAAGATGCTCACTGGAGAAATGGACATTGATGAAAGTAAGATAACAAAGCCAGTCTTGATTTCAGATTTTATGGACCTGAAAATCAGAGGAGATAAAAAAGATGTTGATAATGATACCAAGGGTTCATATTCCTGCAATGCATCCTCTGCTTCAGATAGCCAGGGTAACACCATGTCATATGGTGCAAGTACAAGTACAACTGCAACCTTCTCTGTTAAATATGATCGAAGCTTGTAA 1182 0.3968 MTCFPFSFGRKLPSAPKHYPDIDEELSGIQNVRIFTYKELKVASDNFSQSNKIGQGGFGSVYKGLLKDGKLAAIKVLSEESTQGVKEFMTEINVISEIEHENLVKLYGCCVEGKNRILVYNFLENNSLAQTLLGSGHSSNTFDWKTRSKICIGIARGLSYLHEEVKPHIVHRDIKASNILLDKNFTPKISDFGLAKLIPSYMTHVSTRVAGTIGYLAPEYALRGHLTRKADIYSFGVLLVEIVSGRCHTNTRLPIGEQFLLETTWELYKQRELVGLVDASLDGYFDAEEACTFLKVGLLCTQDTSKLRPPMSSVVKMLTGEMDIDESKITKPVLISDFMDLKIRGDKKDVDNDTKGSYSCNASSASDSQGNTMSYGASTSTTATFSVKYDRSL 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g01892 393 Pfam Protein kinase domain 48 248 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco9g01892 393 ProSitePatterns Protein kinases ATP-binding region signature. 53 75 IPR017441 GO:0005524
Phco9g01892 393 FunFam cold-responsive protein kinase 1 18 122 - -
Phco9g01892 393 ProSitePatterns Serine/Threonine protein kinases active-site signature. 169 181 IPR008271 GO:0004672|GO:0006468
Phco9g01892 393 Gene3D Transferase(Phosphotransferase) domain 1 123 334 - -
Phco9g01892 393 MobiDBLite consensus disorder prediction 355 376 - -
Phco9g01892 393 SUPERFAMILY Protein kinase-like (PK-like) 24 318 IPR011009 -
Phco9g01892 393 FunFam cold-responsive protein kinase 1 123 334 - -
Phco9g01892 393 SMART serkin_6 47 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco9g01892 393 Gene3D Phosphorylase Kinase; domain 1 19 122 - -
Phco9g01892 393 MobiDBLite consensus disorder prediction 351 376 - -
Phco9g01892 393 CDD STKc_IRAK 53 320 - -
Phco9g01892 393 ProSiteProfiles Protein kinase domain profile. 47 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco9g01892 393 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 30 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g01892 Phco-Chr9 43545291 43549341 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Phco9g01892 Pkinase 5e-47 CL0016