Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g01863 ATGCGGTTAATCCATGTTCTTATCTTAGGGTTTGTGGCTCTGAATTGCGTTCATGTTTTCGAATCCAATGCTCAACTCATACCACAAGATGAAGTGAAAGTACTACAAGCAATATCTGATAAACTAGAGAACTTGAATTGGACAGTTACAGAGCGTTCCTGCGTAGAAGATGGAGGGTTCAATGGCAAGATGAGTATAGGGAATGACATCGTGAGGAATGTCACATGCGATTGCAACTTCCAAAATAAAACAGTTTGCCATGTTGATAACATCTTTCTCAAGGGTCAAAATATATCTGGAGTTTTTCCCAGTGAATTTGGAAATCTCACTCATCTGAAAGTGCTTGATCTAACACGCAACTATATCAACGGCTCGCTTCCAAAAAGTTTTCCACCCAATGCTACAGTCATCAAATTGTTACTTCTGGGAAACAGACTAAGTGGACCAATTCCCACAGAAATTGGTGATATTGCTAATCTGGAGGAACTGGTCTTAGATTGTAACCAACTTGAAGGACCACTTCCTTCTAATCTTGGAAATTTGAGCAACTTGAAGAGACTGCTTCTTTCTGCAAATAATTTTACAGGGACCATACCAGAAACATTTGGCGAACTTAAAAATCTGACTGATTTTAGGATAGATGGAAGCAGTTTATCTGGACCAATACCCAGTTTCATTGGGAACTGGACCAAACTTGAAAGACTGGATTTGCAGGGAACAAATATGGAAGGCCCAATTCCTTCCAATATATCTCAGTTGAAACTTTTGACTGAATTGAGAATAACAGATTTGAAAGGACCACCTATGAATTTTCCTGATCTGGAGGAGTTGAAAAACATGGAGCGACTGGAATTAAGAAATTGCTTTATCACGGGTACTATTCCAGATTACATCGCTCAAATGTCAAACTTAGATACTTTGGACCTAAGCTTCAACATGTTAACTGGTAGAGTCCCAGATTTCATACAAAATTTGAGTAAACTAGATTACTTGTTTCTGACAAATAATTCGCTGAGCGGAGAAATTCAGGACTGGATACTGAGCTTTAAACAAAACATAGATTTATCTTACAACAATTTTACCAAGTCTTCTGCATCTAGCTGTCAGCTCTCTGCTGTGAACTTGGCTTCAAGCCATTCTTCTTCTTCAGTGGTAACTACGGCTTCAACTTTTTGTTTGAAGAGGAACCTTCCTTGTGCAGGACAACCCCAGTATAAGTCATTGTTCATAAACTGTGGAGGAAATGAGGGGGAGTTTGAAGGCAATAACTATGTAGGTGACCTCCATCGAGATGGCATTTCAAACTTTGATCTTAGAAATGAAGGGCAATGGGCCTATAGCAGCACAGGAGTATTTATGGGAAATAATCATGCAGATTATATAGCAGAAAATGCATTTTCTTTGAACATTAGTGGTCCAGAATATTACCAAAACGCTCGCCTTTCCCCTATGTCGCTTTACTACTATGGCCTTTGTATGCCAAACGGCAACTATAAAGTGAAGCTCCATTTTGCTGAGATAATGTATTCTGATGATCAAACTTATAGTAGTCTAGGAAGGCGCATATTTGATGTTTCAGTTCAAGGTTTTAGATATCTGCAAGACTTTAACATTGTGGAAGAGGCAGGTGGAGTTGGAAAGGGCATCACTAGGGAATTTGATGTTGATGTTCATGATGGTACCTTGGAAATCCACTTATACTGGGCAGGGAAAGGAACTACTTCCATTCCAGATAGAGGTGTATATGGACCTCTTATATCTGCTATTGAGATGATACCAAACTTTGAAAATCCTTCAAAAGGGCTGTCTGCTGGAGTCATTGCTGGAATTGTTGCTGCATCATGTGGGTTTGTCATATTGATACTGGTTGTCCTTTGGAAGATGGGTCTTCTTTGTAGGAAAGATACAACTGATAGAGAACTTCTAGATATGAAAACGGGCTATTACAGCTTAAGACAAATTAAAGCAGCTACTAATAACTTTGACCCTGCAAATAAGATAGGTGAAGGAGGATTTGGGCCTGTGTACAAGGGTGTGCTGTCAGATAGTGATGTGATTGCAGTTAAGCAGCTTTCCGCCAAATCAAAGCAGGGGAACCGAGAATTTGTCAATGAAATTGGAATGATATCTGCTTTGCAGCATCCAAATCTGGTGAAGCTATATGGCTGTTGCATTGAAGGAAACCAGTTGCTACTGATATATGAGTACATGGAGAACAATAGTCTTGCTCGTGCACTTTTTGGTGAAGAAGAACAGAAGCTGCACTTAGACTGGCCTACAAGAATGAAGATTTGTGTGGGGATAGCAAGGGGACTGGCTTATCTTCACGAGGAATCAAGGTTGAAAATAGTACACAGGGACATTAAGGCAACCAATGTCTTACTTGACAGGGATCTGAATGCCAAGATCTCTGACTTTGGTTTAGCTAAGCTTGATGAAGAAGAAAATACTCATATCAGTACACGTATAGCTGGAACAATTGGCTACATGGCACCGGAATATGCTATGAGGGGTTACTTGACTGATAAAGCAGATGTATATAGCTTTGGAGTTGTAGCTTTAGAGATTGTTAGTGGAAAAAGCAACACAAAATACAGGCCAAAGGAAGAGTTTGTATATCTTCTAGATTGGGCTTATGTTCTCCAAGAGCAAGGAAACCTTCTGGAATTGATGGATCCAAGTCTTGGTTCAAAGTACTCTCAAGAGGAAGCCATGAGAATGCTGAGCTTGGCACTCTTGTGCACCAATCCATCTCCCACTCTTAGACCAACCATGTCTTCTGTTGTGAGCATGCTTGAAGGAAAAATTCCAATCCAAGCACCTATAATCAAGCGCACTGAGACCAACCAAGATGTAAGATTTAAAGCTTTTGAGTTGCTATCACAAGACAGCCAAACTCATGTTTCATCTGCATATTCTCAAGAAAGTATGCAGCAAGGACACAAATCAGAAGATGGACCATGGCTTGACTCCTCTGTGTATCTTCAAAGTGGAGATGATTATTCTTCAGACAATAAACTAATTTAA 3027 0.3987 MRLIHVLILGFVALNCVHVFESNAQLIPQDEVKVLQAISDKLENLNWTVTERSCVEDGGFNGKMSIGNDIVRNVTCDCNFQNKTVCHVDNIFLKGQNISGVFPSEFGNLTHLKVLDLTRNYINGSLPKSFPPNATVIKLLLLGNRLSGPIPTEIGDIANLEELVLDCNQLEGPLPSNLGNLSNLKRLLLSANNFTGTIPETFGELKNLTDFRIDGSSLSGPIPSFIGNWTKLERLDLQGTNMEGPIPSNISQLKLLTELRITDLKGPPMNFPDLEELKNMERLELRNCFITGTIPDYIAQMSNLDTLDLSFNMLTGRVPDFIQNLSKLDYLFLTNNSLSGEIQDWILSFKQNIDLSYNNFTKSSASSCQLSAVNLASSHSSSSVVTTASTFCLKRNLPCAGQPQYKSLFINCGGNEGEFEGNNYVGDLHRDGISNFDLRNEGQWAYSSTGVFMGNNHADYIAENAFSLNISGPEYYQNARLSPMSLYYYGLCMPNGNYKVKLHFAEIMYSDDQTYSSLGRRIFDVSVQGFRYLQDFNIVEEAGGVGKGITREFDVDVHDGTLEIHLYWAGKGTTSIPDRGVYGPLISAIEMIPNFENPSKGLSAGVIAGIVAASCGFVILILVVLWKMGLLCRKDTTDRELLDMKTGYYSLRQIKAATNNFDPANKIGEGGFGPVYKGVLSDSDVIAVKQLSAKSKQGNREFVNEIGMISALQHPNLVKLYGCCIEGNQLLLIYEYMENNSLARALFGEEEQKLHLDWPTRMKICVGIARGLAYLHEESRLKIVHRDIKATNVLLDRDLNAKISDFGLAKLDEEENTHISTRIAGTIGYMAPEYAMRGYLTDKADVYSFGVVALEIVSGKSNTKYRPKEEFVYLLDWAYVLQEQGNLLELMDPSLGSKYSQEEAMRMLSLALLCTNPSPTLRPTMSSVVSMLEGKIPIQAPIIKRTETNQDVRFKAFELLSQDSQTHVSSAYSQESMQQGHKSEDGPWLDSSVYLQSGDDYSSDNKLI 1008
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g01863 1008 Gene3D Phosphorylase Kinase; domain 1 628 736 - -
Phco9g01863 1008 Gene3D Ribonuclease Inhibitor 75 263 IPR032675 -
Phco9g01863 1008 ProSiteProfiles Protein kinase domain profile. 661 943 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco9g01863 1008 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 198 265 - -
Phco9g01863 1008 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 405 594 - -
Phco9g01863 1008 Gene3D Transferase(Phosphotransferase) domain 1 737 953 - -
Phco9g01863 1008 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 632 736 - -
Phco9g01863 1008 SUPERFAMILY L domain-like 74 365 - -
Phco9g01863 1008 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g53440 266 390 - -
Phco9g01863 1008 FunFam Putative LRR receptor-like serine/threonine-protein kinase 737 944 - -
Phco9g01863 1008 SMART serkin_6 661 932 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco9g01863 1008 Pfam Leucine rich repeat 159 216 IPR001611 GO:0005515
Phco9g01863 1008 Pfam Leucine rich repeat 279 338 IPR001611 GO:0005515
Phco9g01863 1008 Pfam Protein tyrosine and serine/threonine kinase 665 931 IPR001245 GO:0004672|GO:0006468
Phco9g01863 1008 SUPERFAMILY Galactose-binding domain-like 483 572 IPR008979 -
Phco9g01863 1008 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 19 964 - -
Phco9g01863 1008 Gene3D Ribonuclease Inhibitor 264 392 IPR032675 -
Phco9g01863 1008 MobiDBLite consensus disorder prediction 969 989 - -
Phco9g01863 1008 Gene3D - 407 594 - -
Phco9g01863 1008 CDD STKc_IRAK 667 934 - -
Phco9g01863 1008 SUPERFAMILY Protein kinase-like (PK-like) 646 945 IPR011009 -
Phco9g01863 1008 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g53440 31 197 - -
Phco9g01863 1008 Pfam Malectin domain 407 589 IPR021720 -
Phco9g01863 1008 ProSitePatterns Serine/Threonine protein kinases active-site signature. 783 795 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g01863 Phco-Chr9 43232605 43244171 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Phco9g01863 PK_Tyr_Ser-Thr 3e-50 CL0016