Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g01851 ATGGTGAGATTCAACTTGGTCATGCTTTGCTTATCTGTGTTGTTATGTGCTGTTAATGCATTGAACACTGATGGGGTGGCTCTTCTGTCACTCCAGAAGCATTGGACATTTGTTCCTCCTTCCATAAACTTGAGTTGGAATGCTTCTGATTCCACTCCATGCTCTTGGTTAGGAGTCCAGTGTGACAAGAACCATAATGCAATTTTTCTTAATCTCTCTGGACACCCAATTTCAGGTCTTTTGGGACCTGAAATAGGACACTTGAGTCATTTGCAAACACTTGACTTGGCCTCAAATAACTTCTCAGGGAAAATACCTCCAGAGTTAGGAAATTGTAGTCAGCTTCAGAACCTGGATCTTTCTTATAACAGTATCACAGGAAACATACCTGATAGTTTGAGAAACTTGCAGAGTTTAGTCTCTTTCAGTGTCGTGTACAATATGCTAACTGGTCAAATTCCTGAGTTCTTGTTTCAACTTCAACACTTGGAAGATCTTCTCCTGAACCGAAACTCTTTGACTGGTTCCATTCCAATGAATGTTGGGAACGGTACACAAATTTTGACGCTGTATCTGGATGGTAATCAGTTGTCAGGAGGGATTCCCCCCTCCATTGGAAACTGCAGTAAATTAGTTGAGCTGTATTTGGATTATAACCAGTTGCATGGAGTTCTTCCTGAAAGTCTTAACAATCTCCAAAGTGTTGTTAAGCTAAGTCTCAGTAATAATAGACTTGAGGGTACCATTCCATTATTTGGTTCTAGCATATGTAAAAGTTTACAGTATTTGGACCTGTCAGTCAATAAGTTTAGTGGAGGCATACCTTCAACCTTGGGAAATTGCAGTGGATTAGTAGATATTTATGCTTTCAACACAAGTGTAGGAGGCAGCATCCCATCATCCTTGGGCCAACTAAGAGAACTTTCTATTCTTCGCCTTGAAAACAATCATTTGTCAGGACAAATACCTTCAGAAATTGGTAATTGTAGGTCATTACAACAGTTGATGTTGAATAACAATGAACTTGAGGGAGAGATTCCAAGTGAATTTGGAAAGCTAAGTCAATTGCAAGATCTCAGACTTCATTTCAACCATTTGACTGGTGGAATTCCAGTAAGCATTTGGAAAATTTCTAGCCTTCAGGAACTGCATGTGTATTACAATAACCTTTCTGGGGAGGTGCCTTCAGAATTGACAGAACTCAAACAACTGAAAAAACTCACCTTGTATCACAATCAATTCTCTGGAGTCATTCCTCAAAGCTTAGGAATCAATAGCAGTTTAGAGGTGTTGGATATCTCATATAATCACTTCACTGGCAACATCCCACCTAATCTCTGCTTTGGACAGCAATTAGTTAGGCTAATCTTGGCTTCAAATCAATTTCAAGGTGGTCTACCACCTGACATAGGAAGATGCACAACACTTGTTAGGTTACGGCTTGATGGAAACAACTTCACTGGACCTTTACCTCATTTTACAAGCAATAGTAGTCTCACCTTCGTGGACTTGAGTGAGAACAATATCAATGGAGCAATTCCATCAAGTTTGGGAAACTGCACAAATCTTACTAATGTTATTTTGTCCCACAACAATCTTTCTGGTGTCATACCCTTTGAGCTAGGAAACCTTGTGAACCTTCAAAAGCTGAACCTTTCTCACAACAAATTAGGAGGTTCTTTACCTCCTGAGCTGTCAAACTGCAAGAAAATGCAATACTTTGATGTTGGATTCAATTCTCTAAATGGTTCATTCCCGTCGAGTTTAAGAACTTGGACAGGGTTGACAACATTAAATTTAAGGGACAATCATTTCACTGGTGGTATCCCAACTTTCTTATCAGAATATGAAGGCCTTTCTGATCTACATCTTGGGGGAAATGATTTTGGAGGCCAAATTCCTAGATCAATTGGTGAGTTGCACAATCTTTTGTATCAGTTGAATCTAAGTGCTAATGAGCTAACAGGTGAAATTCCTCCAGAGATTGGGAAACTGAAATCCCTGCAAAGCCTCGATATTTCTCTTAACAACCTGACTGGAAAAATTGAAGTTCTTGAAGATCTCTCTTCATTGACTGAACTCAATATTTCATACAATTCTTTTTCTGGTCCTCTTCCAGACACACTGGTGAACTTGCTCCATTTTTCTCCCCTATCATTCTTGGGCCTTCCTGGCTTATGTATTAGATGTTTTCCATCGAATTGTTCCAAAAGTAACAGCTTGAAGCCATGTGATGAGAGCAATTCTTCACATAAAAAAGGGCTGAGTAAAATTAAAGTTGTGTTGATAGCAGTTGGATCTACACTACTTGTAACATTTCTGTTACTTGGTCTTGTTTACTGGCTACACTATAAGCAACATGTGAAGATTTTTCCCGAACAGCGGCCATCAACTTTCCTCAAGAAGGTGATGAAGGTTACACAGAACCTAAATGATAGGCATATTATTGGGAGAGGAGCGCATGGAGTTATTTACAAAGTTGAATTCAGTCAAGACAATGTTTTTGTCATAAAGAAATTTCCCTTTTCAGACAACGATGATCAGATCACTAGCATGACCACAGAGATTAAAACCACTGCGATGATTAGGCACCGAAATCTAGTAAGAATAAAAGACTTCTGGTTAAGAAAGGACTGTGGTCTAATTCTCTACAAGTACATGGAAAATGGAAGTCTTCATGATGTTCTGCATGAGAAGTATCCACCACCACCTTTAGAGTGGAATGTCCGCTATAAGATTGCTGTTGGAATTGCACATGGACTTGAATATCTTCATCATGATTGTCATCCCTTCATAGTGCACAGAGACATTAAACCAAAGAATATACTTTTGGATTCTGACATGGAGCCTCATATTTCTGATTTTGGCATTGCCAGGCTTCTTGACCATTCCTCTTCGTTGCAATCGTTCTCTGTTCCTGGTACAGTTGGGTACATTGCACCAGAGAATGCTTATTCAGCAGTGATGAGTACAAAGTCTGATGTTTATAGTTATGGAGTGGTTTTGCTAGAACTGATAAGCAGAAAGAAGGTGCTTGATGATCCTTCATTTGTGGAAGGAACAGATCTTGTGGGGTGGGTTACATCTACCTGGGAAAAAACAAAAGGCATTGATGGAATTGTTGACTCAGGGCTTGAAGAGGAACTTTTGGCTTCAAATTTGAGGGAAGAAGTTGAACAAATGCTACTGATGGCATTGAGATGTACTAAGCAGCATCCAGGTGAGAGACCAACAATGAGAGAAGTGGTTAAGGACTTGACAGTTAGATGCAATAAAGGTCCTGAAATTAAGAGTAACCAAATGTTGGCCTAG 3312 0.3949 MVRFNLVMLCLSVLLCAVNALNTDGVALLSLQKHWTFVPPSINLSWNASDSTPCSWLGVQCDKNHNAIFLNLSGHPISGLLGPEIGHLSHLQTLDLASNNFSGKIPPELGNCSQLQNLDLSYNSITGNIPDSLRNLQSLVSFSVVYNMLTGQIPEFLFQLQHLEDLLLNRNSLTGSIPMNVGNGTQILTLYLDGNQLSGGIPPSIGNCSKLVELYLDYNQLHGVLPESLNNLQSVVKLSLSNNRLEGTIPLFGSSICKSLQYLDLSVNKFSGGIPSTLGNCSGLVDIYAFNTSVGGSIPSSLGQLRELSILRLENNHLSGQIPSEIGNCRSLQQLMLNNNELEGEIPSEFGKLSQLQDLRLHFNHLTGGIPVSIWKISSLQELHVYYNNLSGEVPSELTELKQLKKLTLYHNQFSGVIPQSLGINSSLEVLDISYNHFTGNIPPNLCFGQQLVRLILASNQFQGGLPPDIGRCTTLVRLRLDGNNFTGPLPHFTSNSSLTFVDLSENNINGAIPSSLGNCTNLTNVILSHNNLSGVIPFELGNLVNLQKLNLSHNKLGGSLPPELSNCKKMQYFDVGFNSLNGSFPSSLRTWTGLTTLNLRDNHFTGGIPTFLSEYEGLSDLHLGGNDFGGQIPRSIGELHNLLYQLNLSANELTGEIPPEIGKLKSLQSLDISLNNLTGKIEVLEDLSSLTELNISYNSFSGPLPDTLVNLLHFSPLSFLGLPGLCIRCFPSNCSKSNSLKPCDESNSSHKKGLSKIKVVLIAVGSTLLVTFLLLGLVYWLHYKQHVKIFPEQRPSTFLKKVMKVTQNLNDRHIIGRGAHGVIYKVEFSQDNVFVIKKFPFSDNDDQITSMTTEIKTTAMIRHRNLVRIKDFWLRKDCGLILYKYMENGSLHDVLHEKYPPPPLEWNVRYKIAVGIAHGLEYLHHDCHPFIVHRDIKPKNILLDSDMEPHISDFGIARLLDHSSSLQSFSVPGTVGYIAPENAYSAVMSTKSDVYSYGVVLLELISRKKVLDDPSFVEGTDLVGWVTSTWEKTKGIDGIVDSGLEEELLASNLREEVEQMLLMALRCTKQHPGERPTMREVVKDLTVRCNKGPEIKSNQMLA 1103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g01851 1103 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 253 451 - -
Phco9g01851 1103 Pfam Leucine rich repeat N-terminal domain 22 62 IPR013210 -
Phco9g01851 1103 Pfam Protein kinase domain 813 1084 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco9g01851 1103 FunFam Serine/threonine-protein kinase-like protein CCR4 887 1101 - -
Phco9g01851 1103 FunFam Leucine-rich repeat receptor-like protein kinase PEPR1 20 181 - -
Phco9g01851 1103 ProSiteProfiles Leucine-rich repeat profile. 546 568 IPR001611 GO:0005515
Phco9g01851 1103 Gene3D Ribonuclease Inhibitor 497 744 IPR032675 -
Phco9g01851 1103 Gene3D Ribonuclease Inhibitor 425 496 IPR032675 -
Phco9g01851 1103 SMART LRR_typ_2 401 424 IPR003591 -
Phco9g01851 1103 SMART LRR_typ_2 688 711 IPR003591 -
Phco9g01851 1103 SMART LRR_typ_2 640 665 IPR003591 -
Phco9g01851 1103 SMART LRR_typ_2 88 112 IPR003591 -
Phco9g01851 1103 SMART LRR_typ_2 353 377 IPR003591 -
Phco9g01851 1103 SMART LRR_typ_2 232 254 IPR003591 -
Phco9g01851 1103 SMART LRR_typ_2 160 184 IPR003591 -
Phco9g01851 1103 SMART LRR_typ_2 544 568 IPR003591 -
Phco9g01851 1103 SMART LRR_typ_2 208 231 IPR003591 -
Phco9g01851 1103 SMART LRR_typ_2 305 329 IPR003591 -
Phco9g01851 1103 SMART LRR_typ_2 426 449 IPR003591 -
Phco9g01851 1103 Pfam Leucine Rich Repeat 427 447 IPR001611 GO:0005515
Phco9g01851 1103 ProSiteProfiles Protein kinase domain profile. 810 1088 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco9g01851 1103 ProSitePatterns Serine/Threonine protein kinases active-site signature. 932 944 IPR008271 GO:0004672|GO:0006468
Phco9g01851 1103 Gene3D Ribonuclease Inhibitor 183 423 IPR032675 -
Phco9g01851 1103 Coils Coil 668 688 - -
Phco9g01851 1103 ProSiteProfiles Leucine-rich repeat profile. 667 689 IPR001611 GO:0005515
Phco9g01851 1103 ProSiteProfiles Leucine-rich repeat profile. 114 137 IPR001611 GO:0005515
Phco9g01851 1103 FunFam Leucine-rich repeat receptor-like protein kinase PEPR1 452 736 - -
Phco9g01851 1103 SMART serkin_6 810 1088 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco9g01851 1103 PRINTS Leucine-rich repeat signature 544 557 - -
Phco9g01851 1103 PRINTS Leucine-rich repeat signature 115 128 - -
Phco9g01851 1103 Gene3D Transferase(Phosphotransferase) domain 1 887 1100 - -
Phco9g01851 1103 SUPERFAMILY RNI-like 418 743 - -
Phco9g01851 1103 SUPERFAMILY L domain-like 36 201 - -
Phco9g01851 1103 Pfam Leucine rich repeat 89 149 IPR001611 GO:0005515
Phco9g01851 1103 Pfam Leucine rich repeat 498 557 IPR001611 GO:0005515
Phco9g01851 1103 Pfam Leucine rich repeat 644 700 IPR001611 GO:0005515
Phco9g01851 1103 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 342 1085 - -
Phco9g01851 1103 Gene3D Phosphorylase Kinase; domain 1 780 886 - -
Phco9g01851 1103 SUPERFAMILY Protein kinase-like (PK-like) 793 1087 IPR011009 -
Phco9g01851 1103 ProSitePatterns Protein kinases ATP-binding region signature. 816 839 IPR017441 GO:0005524
Phco9g01851 1103 Gene3D Ribonuclease Inhibitor 21 180 IPR032675 -
Phco9g01851 1103 SUPERFAMILY RNI-like 152 488 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g01851 Phco-Chr9 42975400 42978814 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Phco9g01851 Pkinase 5.5e-44 CL0016