Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g01819 ATGGATAGTGGCTACTACAATCAGCGACACAACCCTCACCTCGACAACAACAATGAACAACATTTACCTCCTGGCTTCCGGTTCCACCCCACAGATGAGGAACTCATCACATACTATCTCCTCAAGAAGGTTCTAGACAGCTCCTTCACTGGCCGAGCCATAGTTGAAGTCGACCTCAACAAGTGCGAACCATGGGAGCTTCCTGAGAAAGCAAAGATGGGCGAGAAGGAATGGTACTTCTATAGCCTTCGTGACCGTAAGTACCCAACTGGCTTACGCACCAACAGGGCCACAGAAGCTGGTTATTGGAAAGCCACTGGAAAAGACCGAGAGATCTATAGCTCCAAAACCTGTTCCCTCGTTGGAATGAAGAAAACCCTTGTTTTCTATAGAGGAAGAGCTCCAAAGGGTGAAAAGAGCAACTGGGTCATGCACGAGTATCGTTTAGAAGGCAAATTCGCTTACCACTACCTCTCCAGAAGCTCCAAGGATGAGTGGGTGATATCGCGTGTGTTTCAGAAGAACAACACCGGCGGTGCCTCCACTGTGTCAGCCGCCGCAGCCACCGGCGGTTCCAAGAAAACGAGAATGAGCACATCAAACACAAGCAGCAACATGAGCCTCTGCCCCGAACCGGGTTCACCCTCTTCCATTTACCTCCCACCGCTTCTAGAATCTTCTCCATACGCCGCCAGCAGCAGCGCCGTCGCAACATTCAACGACCGCGAAAACTACTCCTTCGAAAGCGCTGCCGCCGCCGCAGCCGCCGCCAACCAAAGGGAGCACGTGTCCTGTTTCTCCACGATATCCACTGACGCTTCCGCCTTCAACAACCTCGCTCCGCAGCCGGAGCCGCCACTCGACCCTTTCTCCCGCTTTCACAGGAACAACGTTGGACTATCCGCCTTCCCATGTCTGAGGTCCTTGCACGACAACCTTAACCTCCCCTTCTTTTTCCCTCCCGTGGTCCATGGCGGCGCTGATGTAGCAAATTTTACCGCCGTCACAAACTTTCCGGCGCCGGAGGATCCGAGGGTGGTTGACGGCAGCTCTGGCATGTCGATTGTACCGTCCGAATTGGATTGCATGTGGGGCTATTGA 1101 0.5359 MDSGYYNQRHNPHLDNNNEQHLPPGFRFHPTDEELITYYLLKKVLDSSFTGRAIVEVDLNKCEPWELPEKAKMGEKEWYFYSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSKTCSLVGMKKTLVFYRGRAPKGEKSNWVMHEYRLEGKFAYHYLSRSSKDEWVISRVFQKNNTGGASTVSAAAATGGSKKTRMSTSNTSSNMSLCPEPGSPSSIYLPPLLESSPYAASSSAVATFNDRENYSFESAAAAAAAANQREHVSCFSTISTDASAFNNLAPQPEPPLDPFSRFHRNNVGLSAFPCLRSLHDNLNLPFFFPPVVHGGADVANFTAVTNFPAPEDPRVVDGSSGMSIVPSELDCMWGY 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g01819 366 Gene3D NAC domain 31 178 IPR036093 GO:0003677|GO:0006355
Phco9g01819 366 MobiDBLite consensus disorder prediction 181 210 - -
Phco9g01819 366 SUPERFAMILY NAC domain 18 174 IPR036093 GO:0003677|GO:0006355
Phco9g01819 366 FunFam NAC domain-containing protein 100-like 31 178 - -
Phco9g01819 366 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 19 241 - -
Phco9g01819 366 Pfam No apical meristem (NAM) protein 23 149 IPR003441 GO:0003677|GO:0006355
Phco9g01819 366 MobiDBLite consensus disorder prediction 1 25 - -
Phco9g01819 366 ProSiteProfiles NAC domain profile. 22 174 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g01819 Phco-Chr9 42368708 42370752 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Phco9g01819 NAM 3.9e-40 No_clan