Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g01810 ATGGTGTTGCAAAGATATTGCCCTATGGCTTTTGTGCAATGGAGTTTCTTCGCTTGGTTTATTTGCTTTTATGTGGGACTTGAGACCCTAGCCAGTTCCTGTGATAAGCATGACTTGTTGGCCCTAAAGGAATTTGCAGGCAACCTTACCGAAGGGTCTATCATCACAGCATGGTCAGATGATGTTGTCTGCTGCAAATGGGTTGGAGTTGTTTGTGACGATGTGGTTGATGGAGGAGCTGGTAGTAGAGTGTCCAAGTTGATTCTACCAGGAATGGGTCTTAACGGCACGATTTCAAGTTCTTTAGCTCATCTTGATGAACTGAAAGTGCTTGATATTTCGTTCAATCGTCTCCAAGGTGGATTGCCTTCTGAGTTATCTAATTTGAAGCAGTTAGAAGTTCTTGACTTGAGCAATAATATTCTTTCTGGACCACTTGTTGGGGCACTCTCTGGTTTGCAATCCATTCAGATTCTGAATATTTCTAGCAATTTATTTGTTGGAGACCTCTTCCAATTTGGAGGATTACAACATCTCGTTGCTCTTAGCATGAGCAACAATTCATTCACTGGTCAGTTCAATTCTGAAATTTGCAGCTTCTCCAAGGGTATTCATATTCTTGATATATCAAAAAATAAATTTTCTGGTGATCTTGAATGGTTGGAAAACTGTAGCACATCTCTCCAAGAGTTACATTTGGATTCCAATTTTTTTACTGGCTATCTTCCTGATTCCTTGTATTCAATGTCAGCCTTGGAGCAGCTCTCAGTCTCCATGAACAACCTCTCTGGTCAGTTAAGCATGAAGCTAAGTAACCTCTCAAACCTAAAATCTCTAATAATTTCTGGAAATCGGTTTTCAGGGGAACTCCCAAATGTTTTTGGGAATCTTTCGGACTTTGAACAACTAATAGGACACTCCAATTCATTTTCTGGATCACTGCCTTCCACCTTGGCCTTGTGCTCAAAACTTCGAGTGCTTGATCTTCGAAATAATTCTTTGACAGGTTCTGTTAGCCTTAATTTCACTGGGTTGTCTAATCTTTCCACGTTGGACCTTGGTAGCAATCATTTTAATGGACCCCTTCCAAATTCTGTGTCCAATTGCCATGAATTGACAATGTTAAGCCTTGCGAAAAATGAACTAACTGGCCAAATCCCTGGGAGTTATGCAAACCTCACTTCACTTTTGACTCTCTCTCTGTCAAACAATAGCTTTGAGAACCTATCTGGGGCGCTTTATGTACTGCAGCAGTGCAAAAATCTCACCACTCTTATCCTCACAAAGAATTTCCGTGGTGAGGAAATTTCAGAAAATTTAAGGGTAAGCTTCAAGAGCCTTGTGGTTTTAGCACTTGGAGATTGTAGTCTCAAAGGCCGTATTCCTACCTGGCTATTGAATTGCTCAAAATTGGAAGTTCTTGACTTGTCATGGAACCTTTTGGAAGGCAGTATCCCTTCTTGGATTGGTTGGATGGATCATCTGTTCTACTTGGATTTGTCAAATAATTCTCTTACAGGAGAAATACCAAAAGGTTTGACAGAGCTGAAGGGCCTCATATCCCTAAATTATCATATATCAAGTCTCATTGCATCTGCTGCTATTCCTCTCTATGTCAAGAGAAACAAGAGTGCTAATGGGTTGCAATATAACCATGCTTCGAGTTTCCCTCCATCAATATACTTGAGCAATAACGGATTAAGTGGAACTATATGGCCTGAAATCGGTCGTTTGAAAGAACTTCATATCTTAGATTTAAGCAGGAACAACATCACCGGCACCATTCCCAGCTCTATTTCTCAGATGAAGAATTTGGAAACATTAGACTTATCTAATAATAATCTATATGGAACTATTCCTCCATCATTTAACAACCTCACATTCTTGTCTAAGTTCAGTGTGGGATATAATCACTTATGGGGAACAATTCCAGCTGGGGGGCAATTTTCAAGTTTCCCAAATTCAAGTTTTGAGGGCAACCTGGGGCTTTGTGGGGAAACATATCATCATTGTATCAATGAAAAAAATGCCAACATTGATACTCATTCCGAGGGAAAATTTGGTAAAAGCAGTGTCCTTGGCATCACAATTGGTTCAGGAGTGGGTCTTGCACTACTTATTGCAGTTATTCTGCTAAGAATGTCAAAGAGGGATGAGGATAAACCGGTGGATAACTTTGATGAGGAGCTTAGCTGGCCAAACAGAATACCTGAAGCACTTGTGACTTCAAAATTGGTGCTTTTTCAGAATTCGGATTGCAAGGATCTCACAGTTGAAGATTTGATAAACTCTACTAACAATTTTAACCAAAAAAATATAATTGGTTGTGGTGGGTTTGGTCTTGTCTACAAGGCGAATCTTCCAAATGGCACAAAGGTAGCAGTGAAGAAACTTTCAGGATACTGTGGTCAGGTGGAACGAGAATTCCAAGCAGAAGTGGAGGCACTCTCTAGAGCTCAACATAAGAACCTTGTTTCACTCAAAGGTTATTGTCAGCATGTCAATGACAGATTGTTAATTTACTCCTACTTGGAGAATGGAAGCCTTGACTATTGGTTGCATGAGAGTGAGGATGGAAATTCATCTCTAAAATGGAATGTAAGACTCAAGATTGCCCAAGGTGCAGCTCATGGACTAGCTTATTTGCACAAGGAGTGTGAACCACATATTGTGCACAGAGATATCAAATCTAGCAACATACTTTTGGATGATAAATTTGAAGCTTATTTGGCTGACTTTGGTCTTTCAAGGCTTCTTCAACCCTATGACACTCATGTTTCAACAGATTTAGTGGGAACTTTAGGATATATTCCTCCAGAATATAGTCAAGCTCTGAAAGCAACATTCAAAGGTGATATTTATAGCTTTGGTGTTGTTCTTGTTGAGCTTCTTACTGGTCGAAGGCCTGTAGAAGTCTTTGTCGGGCAATGCAGCAGGAATCTAGTGTCTTGGGTGTTTCAGATGAAATCCGAAAATAGGGATCAAGAAATTTTTGATTCAGTGATTTGGCACAAGGATATTGAGAAACAGCTCTTAGAGGTATTAGCTATTGCTTGTAAATGTATAGATGAAGATCCAAGGCAGAGGCCCAATATCGAATTAGTTGTTTCATGGCTTGATGGTGTAGAATTTGATGGCTCTGAACAATCATCATCTTAA 3159 0.3985 MVLQRYCPMAFVQWSFFAWFICFYVGLETLASSCDKHDLLALKEFAGNLTEGSIITAWSDDVVCCKWVGVVCDDVVDGGAGSRVSKLILPGMGLNGTISSSLAHLDELKVLDISFNRLQGGLPSELSNLKQLEVLDLSNNILSGPLVGALSGLQSIQILNISSNLFVGDLFQFGGLQHLVALSMSNNSFTGQFNSEICSFSKGIHILDISKNKFSGDLEWLENCSTSLQELHLDSNFFTGYLPDSLYSMSALEQLSVSMNNLSGQLSMKLSNLSNLKSLIISGNRFSGELPNVFGNLSDFEQLIGHSNSFSGSLPSTLALCSKLRVLDLRNNSLTGSVSLNFTGLSNLSTLDLGSNHFNGPLPNSVSNCHELTMLSLAKNELTGQIPGSYANLTSLLTLSLSNNSFENLSGALYVLQQCKNLTTLILTKNFRGEEISENLRVSFKSLVVLALGDCSLKGRIPTWLLNCSKLEVLDLSWNLLEGSIPSWIGWMDHLFYLDLSNNSLTGEIPKGLTELKGLISLNYHISSLIASAAIPLYVKRNKSANGLQYNHASSFPPSIYLSNNGLSGTIWPEIGRLKELHILDLSRNNITGTIPSSISQMKNLETLDLSNNNLYGTIPPSFNNLTFLSKFSVGYNHLWGTIPAGGQFSSFPNSSFEGNLGLCGETYHHCINEKNANIDTHSEGKFGKSSVLGITIGSGVGLALLIAVILLRMSKRDEDKPVDNFDEELSWPNRIPEALVTSKLVLFQNSDCKDLTVEDLINSTNNFNQKNIIGCGGFGLVYKANLPNGTKVAVKKLSGYCGQVEREFQAEVEALSRAQHKNLVSLKGYCQHVNDRLLIYSYLENGSLDYWLHESEDGNSSLKWNVRLKIAQGAAHGLAYLHKECEPHIVHRDIKSSNILLDDKFEAYLADFGLSRLLQPYDTHVSTDLVGTLGYIPPEYSQALKATFKGDIYSFGVVLVELLTGRRPVEVFVGQCSRNLVSWVFQMKSENRDQEIFDSVIWHKDIEKQLLEVLAIACKCIDEDPRQRPNIELVVSWLDGVEFDGSEQSSS 1052
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g01810 1052 Pfam Leucine rich repeat 580 639 IPR001611 GO:0005515
Phco9g01810 1052 Pfam Leucine rich repeat 446 505 IPR001611 GO:0005515
Phco9g01810 1052 Pfam Leucine rich repeat 107 165 IPR001611 GO:0005515
Phco9g01810 1052 Pfam Leucine rich repeat 323 382 IPR001611 GO:0005515
Phco9g01810 1052 SUPERFAMILY L domain-like 548 664 - -
Phco9g01810 1052 SUPERFAMILY RNI-like 227 526 - -
Phco9g01810 1052 Gene3D Phosphorylase Kinase; domain 1 734 843 - -
Phco9g01810 1052 SMART LRR_typ_2 602 625 IPR003591 -
Phco9g01810 1052 SMART LRR_typ_2 105 128 IPR003591 -
Phco9g01810 1052 SMART LRR_typ_2 492 516 IPR003591 -
Phco9g01810 1052 SMART LRR_typ_2 578 601 IPR003591 -
Phco9g01810 1052 SMART LRR_typ_2 393 416 IPR003591 -
Phco9g01810 1052 SMART LRR_typ_2 345 369 IPR003591 -
Phco9g01810 1052 SMART LRR_typ_2 273 296 IPR003591 -
Phco9g01810 1052 SMART LRR_typ_2 129 152 IPR003591 -
Phco9g01810 1052 ProSiteProfiles Leucine-rich repeat profile. 604 626 IPR001611 GO:0005515
Phco9g01810 1052 Gene3D Ribonuclease Inhibitor 33 171 IPR032675 -
Phco9g01810 1052 Gene3D Ribonuclease Inhibitor 265 366 IPR032675 -
Phco9g01810 1052 Gene3D Transferase(Phosphotransferase) domain 1 844 1048 - -
Phco9g01810 1052 SUPERFAMILY Protein kinase-like (PK-like) 751 1039 IPR011009 -
Phco9g01810 1052 Pfam Protein kinase domain 768 1036 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco9g01810 1052 FunFam Tyrosine-sulfated glycopeptide receptor 1 342 677 - -
Phco9g01810 1052 SMART LRR_sd22_2 129 155 - -
Phco9g01810 1052 SMART LRR_sd22_2 393 411 - -
Phco9g01810 1052 SMART LRR_sd22_2 105 128 - -
Phco9g01810 1052 SMART LRR_sd22_2 321 350 - -
Phco9g01810 1052 SMART LRR_sd22_2 468 483 - -
Phco9g01810 1052 SMART LRR_sd22_2 492 515 - -
Phco9g01810 1052 SMART LRR_sd22_2 249 275 - -
Phco9g01810 1052 SMART LRR_sd22_2 602 628 - -
Phco9g01810 1052 SMART LRR_sd22_2 578 601 - -
Phco9g01810 1052 Gene3D Ribonuclease Inhibitor 172 264 IPR032675 -
Phco9g01810 1052 ProSitePatterns Protein kinases ATP-binding region signature. 774 797 IPR017441 GO:0005524
Phco9g01810 1052 Pfam Leucine Rich Repeat 275 297 IPR001611 GO:0005515
Phco9g01810 1052 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 737 843 - -
Phco9g01810 1052 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 210 338 - -
Phco9g01810 1052 ProSiteProfiles Protein kinase domain profile. 768 1039 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco9g01810 1052 PRINTS Leucine-rich repeat signature 602 615 - -
Phco9g01810 1052 PRINTS Leucine-rich repeat signature 495 508 - -
Phco9g01810 1052 SMART serkin_6 768 1039 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco9g01810 1052 SUPERFAMILY L domain-like 53 311 - -
Phco9g01810 1052 FunFam Leucine-rich repeat receptor-like protein kinase 844 1050 - -
Phco9g01810 1052 Gene3D Ribonuclease Inhibitor 375 680 IPR032675 -
Phco9g01810 1052 ProSitePatterns Serine/Threonine protein kinases active-site signature. 890 902 IPR008271 GO:0004672|GO:0006468
Phco9g01810 1052 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 78 304 - -
Phco9g01810 1052 Pfam Leucine rich repeat N-terminal domain 36 73 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g01810 Phco-Chr9 42188903 42192061 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Phco9g01810 Pkinase 5.5e-43 CL0016