Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g01709 ATGGCCATTCCACTACCTTTCATCGTCATAGCCAGCTTATTTTTGCTCTCATCAAAAGTTTCCTCTGAAACCAACACCATCACTCAGTTTCAACCACTTACCTATGGAACCAACTTGGTTTCTGAGGAAGGAACCTTCCAGTTAGGTTTCTTCAGCCTAGGTACTTCCTCAAACCTCTACCTAGGAATCTGGTTCAAAAAAATCCCACAGAAAACCATTGTTTGGGTTGCCAACCGCAACAATCCAATCAATAACACCATCATCAACAGCAACAACTCAACAGAGTTAACCTTAACCAAAGAAGGAAACCTGGTTCTTCTCAGCAGCAACAACACCGTTCACTGGTCAACAAATGCAACAGCAAAATCTAAATCGGTGAACCCAGTAGCACGGCTTCTGGAAACAGGGAACTTTGTGCTAAGAGATGAAAAGGACAACAATTCTGAAAACTACTTGTGGCAAAGCTTTGACTATCCTTCGGACACACTTTTACCAGGAATGAAGCTAGGGTGGGAAGTAACAACAGGTCTCAACAGATACCTCACGTCTTGGAACAATTGGGAAGAGCCATCTTCTGGTCATTTTTCTTATGGAGTTTCAAGAGGCAACATCCCCGAAATGCAACTTTGGAACGGTTCATCAGTGTCCTACAGAAGTGGCCCTTGGAGTGGCTTTCGATTCAGTGCCACACCCGCATTGAAGCGTCGTTCATTGATGAATATCAACTTTGTTGACAACCCAATGGAAAGTTATTACCAAGTTTTCCCGCGAAATAGATCGATGATTCTGAGAACGGTGGTTAACCAAACCACGAACACTCTTCAGCGTTTCATTTGGGACGAAGAAACTCAAAACTGGAAGCTTGATTTAGTTATCCCCAGAGACGGTTTTTGCGGCTATAACTACTGTGGCTCATTCGGGTACTGTGCTGTGAAGGAGAACTCTTCAGCCTGCGAGTGTTTACGAGGGTTTGAGCCAAAATCGGCTGAAAAGTGGAGTGCAAAGAATTGGAGTGAAGGGTGCGTGCATATAAGTGAAACTAGGTGTAGGGTGAAGAAGAAAGACGGGTTTGTTAAGGTTAGTAACATGAAGATTCCCGACACTAAAACATCGTGGATGAATCGAAGTCTGACGATTGAGGAATGCGAGGCTAAGTGTTGGGAAAATTGTTCTTGCACGGCTTATGCTAATTCGGATATCACTGAAAATGGAAGTGGTTATAGCGGTTGCATCCTCTGGTTCGGTGATCTATTGGATTTGAGATTTCTTCCAGATGCAGGGCAAGATCTTTATGTTAGAATGGATATCTCCAAAATTGAAAATAAAGACAGTTCAAAGAAAATGGTGATTGGGATCACAAGCATAGTTTCATCGATTGTTGCGGTGCTTCTAATATTCACATTCGTTTACCGGAGAAGAAAAGGCAAAGATACAAAAGCAAAAATAAACGAAAGTGAAGAAGATGATCTTGAGCTACCTTTGTTTGATTTTGATACAATAGCATGTGCTACTAGTGACTTCTCAGATGACAACATGCTTGGCCAAGGTGGTTTTGGTCCTGTCTATAAAGGAACATTGGACGGAAAGAATATTGCAGTGAAAAGACTATCTGATACATCTGCCCAAGGACTCAAGGAATTTAAAAATGAAGTTATATTTTGTTCTAAACTTCAACATCGGAATCTTGTCAAAGTTCTCGGATATTGCGTTGAAGAGCAAGAAAAATTACTTATTTATGAATACATGCCTAACAAAAGTTTAAACTTCTTTCTTTTTGATGATTCTCAAAGCAAACTTTTAGATTGGTCTGCACGCTTAAACATTATAAGTGGAATTGCTCGAGGACTTCTTTATCTTCATCAAGATTCTAGGCTAAGGATTATACACAGAGATCTAAAATCAAGTAATATCTTGTTAGATGATGACATGAATCCAAAGATTTCTGATTTTGGATTAGCTAAAGTGGGTAAAGGTGATCAAATTGAAGGGAATACAAAGAGAGTTGTTGGTACATATGGTTATATGGCTCCCGAATATGCAATTGGTGGAGTATTCTCTGTCAAATCTGATGTTTATAGCTTTGGTGTTTTATTGTTAGAGGTTTTAAGTGGAAAGAAAAATAAAGGATTTTCCTACTCAATCCACAGCTATAATCTTATTGAACATGCATGGAGGTGTTGGAAAGAGTGCATCCCAATTGAATTCATTGATACTTGTTTAAGGGACTCATACATTCTATCTGAAGCCTTACGATGTATTCATATCGGTCTTTTATGTGTACAACATCAACCTAATGATAGACCGAATATGACAACTGTAGTTACAATGTTAACGAGTGAAACTACTTTACCACATCCAGAAAAGCCCGTTTTCTTAATGCAAAGGGTTTTAGTTGAGGAAGATGTTGGACAAAATATGTATTGTCCAACCAATGAAGTAACTATTTCTGAGATGGAACCAAGATAA 2466 0.3938 MAIPLPFIVIASLFLLSSKVSSETNTITQFQPLTYGTNLVSEEGTFQLGFFSLGTSSNLYLGIWFKKIPQKTIVWVANRNNPINNTIINSNNSTELTLTKEGNLVLLSSNNTVHWSTNATAKSKSVNPVARLLETGNFVLRDEKDNNSENYLWQSFDYPSDTLLPGMKLGWEVTTGLNRYLTSWNNWEEPSSGHFSYGVSRGNIPEMQLWNGSSVSYRSGPWSGFRFSATPALKRRSLMNINFVDNPMESYYQVFPRNRSMILRTVVNQTTNTLQRFIWDEETQNWKLDLVIPRDGFCGYNYCGSFGYCAVKENSSACECLRGFEPKSAEKWSAKNWSEGCVHISETRCRVKKKDGFVKVSNMKIPDTKTSWMNRSLTIEECEAKCWENCSCTAYANSDITENGSGYSGCILWFGDLLDLRFLPDAGQDLYVRMDISKIENKDSSKKMVIGITSIVSSIVAVLLIFTFVYRRRKGKDTKAKINESEEDDLELPLFDFDTIACATSDFSDDNMLGQGGFGPVYKGTLDGKNIAVKRLSDTSAQGLKEFKNEVIFCSKLQHRNLVKVLGYCVEEQEKLLIYEYMPNKSLNFFLFDDSQSKLLDWSARLNIISGIARGLLYLHQDSRLRIIHRDLKSSNILLDDDMNPKISDFGLAKVGKGDQIEGNTKRVVGTYGYMAPEYAIGGVFSVKSDVYSFGVLLLEVLSGKKNKGFSYSIHSYNLIEHAWRCWKECIPIEFIDTCLRDSYILSEALRCIHIGLLCVQHQPNDRPNMTTVVTMLTSETTLPHPEKPVFLMQRVLVEEDVGQNMYCPTNEVTISEMEPR 821
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g01709 821 Gene3D Transferase(Phosphotransferase) domain 1 582 787 - -
Phco9g01709 821 PIRSF SRK 1 821 IPR024171 GO:0004674
Phco9g01709 821 ProSiteProfiles PAN/Apple domain profile. 349 435 IPR003609 -
Phco9g01709 821 Gene3D Phosphorylase Kinase; domain 1 467 581 - -
Phco9g01709 821 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 20 156 - -
Phco9g01709 821 SMART blect_4 30 159 IPR001480 -
Phco9g01709 821 Pfam D-mannose binding lectin 72 184 IPR001480 -
Phco9g01709 821 CDD B_lectin 31 159 IPR001480 -
Phco9g01709 821 ProSiteProfiles Protein kinase domain profile. 507 783 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco9g01709 821 SMART serkin_6 507 777 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco9g01709 821 ProSitePatterns Serine/Threonine protein kinases active-site signature. 627 639 IPR008271 GO:0004672|GO:0006468
Phco9g01709 821 Pfam S-locus glycoprotein domain 217 328 IPR000858 GO:0048544
Phco9g01709 821 SUPERFAMILY alpha-D-mannose-specific plant lectins 73 188 IPR036426 -
Phco9g01709 821 ProSiteProfiles Bulb-type lectin domain profile. 24 153 IPR001480 -
Phco9g01709 821 Pfam Protein tyrosine and serine/threonine kinase 511 777 IPR001245 GO:0004672|GO:0006468
Phco9g01709 821 SMART ntp_6 352 434 IPR003609 -
Phco9g01709 821 Gene3D - 18 156 IPR036426 -
Phco9g01709 821 SUPERFAMILY Protein kinase-like (PK-like) 490 777 IPR011009 -
Phco9g01709 821 Pfam PAN-like domain 349 420 IPR003609 -
Phco9g01709 821 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 471 581 - -
Phco9g01709 821 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 8 768 - -
Phco9g01709 821 CDD STKc_IRAK 513 778 - -
Phco9g01709 821 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 582 785 - -
Phco9g01709 821 CDD PAN_AP_plant 355 433 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g01709 Phco-Chr9 40266866 40271255 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Phco9g01709 PK_Tyr_Ser-Thr 1.1e-45 CL0016