Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g01681 ATGAGAGTATTCCTAACGTTTTTGTTGCCAAATTCTAGAGTGGTTAAAAGAAAAGAGAAAGTCCCCTCCCTTTCTTCATTAGCAAACGCAACTTCTCTCCAAAAGGTCAGTGCTCACTCCAATACAACACAACACAACAGCAGAACCCACCCAGCAAACACAGCACACTCACACACACACTCTCTCTCAGCAGCTCAGGTCTTCGTTCCCATTATCTCTCTCATTCACATTCGTACTGTACCATTCATCGGATCTGACTCCCACCGAACTCCTTCACCGGCATTGGATCCGTTCCACGATCCGACCCATTTCCCCTTCGCTTTGGTTGATCCAAATGGGAATGCCCCACAAGCCATGACCCCAGCCGTGGAGGAGGACCACTACGACCCTTCCCTTTTCCACGACTCCAACGACCGTTTGCTCTCTTCATGCTCCTGCTCCACGTCAGCCTCCGACGACGACGCTCCCACTTCCCAAAACGATAAACCTCCTAAAAACGACACCCATGCCCTCCCCCAATTCCCATTCCCCACCATGTGCAAGTACGATGCCTGGATCTCCGAACCCTCCTCCCTCTCCGAGCGCCGCTCCCGCCTCCTCCGCCAGTTCGGCCTCCCCACCCCGCCGCCCCCCGCCGCAAGCATCCCCCGATCAGCCTCCTCTTACCAATGCACCGACACTTCCACCGCCGCCGCCACTATTCCCCGATCGAAATCCGACAACACCGCGGATCGCGGCACCAAGCATTGCAAGTCCTCTGTTGTTCCCATTCGCGACAATGACAACGGTTTTCTCGTGAATAATAATATTAATTTTAATAGTGGTGGTAGTGGTAGTCATTCTGTGCATAATAGGATTTGTGTGAGTGTATGTGAGGAGGGTGGAATTGGGGAGGGGAATGTGGTGGATGAAGTGGAGCAAGCGTGTACGATTAGGGATTTGGACAATGGAAAGGAGTTTGTGGTGAAGCGGGATGGGGTGTGGAATGAGGTGAAAGAGGTGGGGACTGGGAGGCGTTTGACTGTGGAGGAGTTTGAGATGACGGTAGGGCATTCTCCGATTGTTCAGGAGCTAATGAGGAGGCAGAGTGTGGAGGACGGTGGCGATGGGGAGGGCGTGGATGAGGAAGGTGATGGTGGGAGTGGTGGTGGTGGTGATGAGGGGGATGGTAGCAAAGTGAGGAGAAAAGGAGGGTGGTTTAAGTTTATGAGCTTGAAGAGTGTTGTGGTGGGTCAGAAGGAGAGGCGGAGTGGTGATGAGAGGGATACGTCTTCGTCAGAGAAGGGGGGTGGCCGGAGGTCAAGCTCTGCCACGGATGATAGCCAGGATTGTGGTAGTGGTTTAGTTCATGGGGGTGAGAGAGTGAGGGTTCGGCAGTATGGGAAGTCGTGTAAGGAGGTTACAGGGCTTTATAAGAGCCAGAAGATTCAGGCTCATGATGGATCCATTTGGAGCATTAAGTTTAGTTTGGATGGGAAGTACCTTGCTAGTGCTGGTGAGGATTATGTGATTCATGTTTGGCGGGTTGTGGAGTCTGAGAGGAAGGGCGAGTTGCTCTTGGAGAAACCGGACGATGGGAATTTGAACATGTTGTTTGTTGTGAATGGGTCGCCGGAGCCATCTTCTCCTGGCATGGAGAACAATTCGGAGAAGAAGAGAAGGGGGAGGTTGTCTGTCAGCAGAAAATCGTTGAGCGTGGACCAGTTAGTAGTGCCGGAAACTGTGTTTGCTCTCACTGAAAAACCGGTTTGCACCTTTAAGGGTCATCTCCATGACGTGCTTGACCTTTCTTGGTCCAAGTCTCAGAACTTGCTCTCATCTTCAATGGACAAAACAGTGCGCCTGTGGCATTTGTCTAGCCAGTCTTGTCTGAAAGTTTTTTCACACAGTGACTATGTAACTTGCATCCAGTTTAATCCTGCTGATGATAGATACTTCATTAGTGGATCATTGGATGCCAAGGTTCGTATATGGAGCATACCTGATAGACAAGTTGTTGATTGGACTGATCTACATGAGATGGTCACTGCTGCTTGCTATACGCCAGATGGTCAGGGTGCACTCGTTGGTACTTATAAGGGTAGCTGTCATTCATATAATACATCTGAAAATAAGTTGCAACAGAAAAGTCAGATAAATTTGCAGAACAGGAGAAAGAGATCGAACCACAAGAAAATTACTGGCTTCCAGTTTCTGCCAGGAAGTTCATCAGAAGTCCTCATCACTTCTTCTGATTCTCGGATTCGACTAGTTGATGGTATTGATCTAGTTCACAAGTTTAAAGGATTTCGGAATGCAAATAGCCAAATTTCTGCCTTCCTCGCAGCAAATGGTAAATATGTTGTCTCAGCAAGTGAAGATTCTCATGTATACATCTGGAAAAATGAAGCTGATTGTAGACCTAGCAGGAGTAAAGGTGTCACCGTGACAAGCACATATGAACATTTTCACTGTAAAGATGTGTCAGTGGCCATCCCTTGGCCAGGTATGGATGACACATGGGAGATGCATGATCCATACTTTGGAGAAGAACCTGAGCTTGGTGATAATGGGGATGATGTCTCATCAGCCAATCATCCTCCTACCCCTGTAGAGGAAATTTTTGGTTCTGAAGGTTCACAATATGCTTCGGGTTGTAATAATAGTCCACTTCATGGAACCATTGCAAGTGCAACAGATAGTTATTTTCTTGATAGAATTTCTGCGACATTACCTGAGGGAAAACTTCTAACTACATGGGATCCAAATCCTCAGGTAAGTGTGGATTTATCTTATGGAGTCAATCAAAACATGTCAGCATGGGGTATGGTGATTGTAACTGCAGGCCTTCAAGGGGAAATTAAAATTTTCCAAAATTTTGGATTGCCTCTTGGCATATAA 2880 0.4802 MRVFLTFLLPNSRVVKRKEKVPSLSSLANATSLQKVSAHSNTTQHNSRTHPANTAHSHTHSLSAAQVFVPIISLIHIRTVPFIGSDSHRTPSPALDPFHDPTHFPFALVDPNGNAPQAMTPAVEEDHYDPSLFHDSNDRLLSSCSCSTSASDDDAPTSQNDKPPKNDTHALPQFPFPTMCKYDAWISEPSSLSERRSRLLRQFGLPTPPPPAASIPRSASSYQCTDTSTAAATIPRSKSDNTADRGTKHCKSSVVPIRDNDNGFLVNNNINFNSGGSGSHSVHNRICVSVCEEGGIGEGNVVDEVEQACTIRDLDNGKEFVVKRDGVWNEVKEVGTGRRLTVEEFEMTVGHSPIVQELMRRQSVEDGGDGEGVDEEGDGGSGGGGDEGDGSKVRRKGGWFKFMSLKSVVVGQKERRSGDERDTSSSEKGGGRRSSSATDDSQDCGSGLVHGGERVRVRQYGKSCKEVTGLYKSQKIQAHDGSIWSIKFSLDGKYLASAGEDYVIHVWRVVESERKGELLLEKPDDGNLNMLFVVNGSPEPSSPGMENNSEKKRRGRLSVSRKSLSVDQLVVPETVFALTEKPVCTFKGHLHDVLDLSWSKSQNLLSSSMDKTVRLWHLSSQSCLKVFSHSDYVTCIQFNPADDRYFISGSLDAKVRIWSIPDRQVVDWTDLHEMVTAACYTPDGQGALVGTYKGSCHSYNTSENKLQQKSQINLQNRRKRSNHKKITGFQFLPGSSSEVLITSSDSRIRLVDGIDLVHKFKGFRNANSQISAFLAANGKYVVSASEDSHVYIWKNEADCRPSRSKGVTVTSTYEHFHCKDVSVAIPWPGMDDTWEMHDPYFGEEPELGDNGDDVSSANHPPTPVEEIFGSEGSQYASGCNNSPLHGTIASATDSYFLDRISATLPEGKLLTTWDPNPQVSVDLSYGVNQNMSAWGMVIVTAGLQGEIKIFQNFGLPLGI 959
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g01681 959 MobiDBLite consensus disorder prediction 410 450 - -
Phco9g01681 959 SUPERFAMILY WD40 repeat-like 470 949 IPR036322 GO:0005515
Phco9g01681 959 SMART WD40_4 713 752 IPR001680 GO:0005515
Phco9g01681 959 SMART WD40_4 620 659 IPR001680 GO:0005515
Phco9g01681 959 SMART WD40_4 753 794 IPR001680 GO:0005515
Phco9g01681 959 SMART WD40_4 662 700 IPR001680 GO:0005515
Phco9g01681 959 SMART WD40_4 579 617 IPR001680 GO:0005515
Phco9g01681 959 SMART WD40_4 469 508 IPR001680 GO:0005515
Phco9g01681 959 MobiDBLite consensus disorder prediction 412 428 - -
Phco9g01681 959 FunFam WD repeat-containing protein 44 567 833 - -
Phco9g01681 959 Gene3D - 462 817 IPR015943 GO:0005515
Phco9g01681 959 PANTHER WD REPEAT DOMAIN 44 129 956 IPR040324 -
Phco9g01681 959 MobiDBLite consensus disorder prediction 228 249 - -
Phco9g01681 959 MobiDBLite consensus disorder prediction 363 393 - -
Phco9g01681 959 PRINTS G protein beta WD-40 repeat signature 604 618 IPR020472 -
Phco9g01681 959 PRINTS G protein beta WD-40 repeat signature 495 509 IPR020472 -
Phco9g01681 959 PRINTS G protein beta WD-40 repeat signature 646 660 IPR020472 -
Phco9g01681 959 ProSiteProfiles Trp-Asp (WD) repeats profile. 586 626 IPR001680 GO:0005515
Phco9g01681 959 MobiDBLite consensus disorder prediction 429 443 - -
Phco9g01681 959 MobiDBLite consensus disorder prediction 535 559 - -
Phco9g01681 959 ProSiteProfiles Trp-Asp (WD) repeats profile. 476 517 IPR001680 GO:0005515
Phco9g01681 959 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 476 509 - -
Phco9g01681 959 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 626 660 - -
Phco9g01681 959 MobiDBLite consensus disorder prediction 144 166 - -
Phco9g01681 959 Pfam WD domain, G-beta repeat 622 659 IPR001680 GO:0005515
Phco9g01681 959 Pfam WD domain, G-beta repeat 757 794 IPR001680 GO:0005515
Phco9g01681 959 Pfam WD domain, G-beta repeat 475 507 IPR001680 GO:0005515
Phco9g01681 959 Pfam WD domain, G-beta repeat 581 616 IPR001680 GO:0005515
Phco9g01681 959 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 586 620 - -
Phco9g01681 959 ProSiteProfiles Trp-Asp (WD) repeats profile. 626 660 IPR001680 GO:0005515
Phco9g01681 959 MobiDBLite consensus disorder prediction 31 59 - -
Phco9g01681 959 MobiDBLite consensus disorder prediction 144 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g01681 Phco-Chr9 39643648 39660586 Dispersed/Transposed