Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g01611 ATGGTTTCCCGGGAAAACACCAATTGGCTCTTCGATTACGGCTTGATCGACGATATTCCCGTCCCCGATGCCTCCTTCACCGTCCCTTCCTCCGCCTTCACATGGCCCCCAAACGCCTTGAACGCCACTTCCAATGTCGGTGTTGAAATTGATGGCTCACTGGCGGATTCTGATGGTCTCAAGGAGTCTGGCTCAAAGAAAAGGGTTAGATCTGAGACATGTGCTGCTACTAGCTCCAAGGCATGTCGGGAGAAGTTGCGAAGAGATAAGCTTAACGACAAGTTTGTTGAATTGGGCTCCATTTTGGAGCCTGGAAGGCCTACGAAAACTGACAAGGCTGCTATCCTGATTGATGCTGTCCGAATGGTGACACAGTTACGGGGTGAAGCGCAGAAGTTGAAAGACTCTAATCAGGGTCTTCAAGAAAAGATTAAAGAGTTAAAGGCTGAGAAGAATGAACTTCGAGATGAGAAACAGATGCTCAAGGCAGAGAAGGAGAAGTTGGAGCAGCAGCTGAAATCTTTGAATGCACAACCCAATTTCATGCCTCCCCCTGCTGCTATCCCTGCTGCATTTGCGGCGCAAGGCCAAGCCCATGGAAACAAGTTGGTACCTTTTATTAGTTATCCAGGAGTTGCGATGTGGCAATTCATGCCGCCTGCTGCAGTGGATACTTCACAGGATCACGTACTCCGTCCACCAGTTGCCTAA 711 0.4937 MVSRENTNWLFDYGLIDDIPVPDASFTVPSSAFTWPPNALNATSNVGVEIDGSLADSDGLKESGSKKRVRSETCAATSSKACREKLRRDKLNDKFVELGSILEPGRPTKTDKAAILIDAVRMVTQLRGEAQKLKDSNQGLQEKIKELKAEKNELRDEKQMLKAEKEKLEQQLKSLNAQPNFMPPPAAIPAAFAAQGQAHGNKLVPFISYPGVAMWQFMPPAAVDTSQDHVLRPPVA 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g01611 236 PANTHER BHLH TRANSCRIPTION FACTOR 3 236 IPR044818 GO:0003700|GO:0006355|GO:0006879|GO:0046983
Phco9g01611 236 Gene3D arf6 gtpase in complex with a specific effector, jip4 125 179 - -
Phco9g01611 236 FunFam Transcription factor bHLH34 66 124 - -
Phco9g01611 236 SMART finulus 81 132 IPR011598 GO:0046983
Phco9g01611 236 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 75 126 IPR011598 GO:0046983
Phco9g01611 236 Pfam Helix-loop-helix DNA-binding domain 79 126 IPR011598 GO:0046983
Phco9g01611 236 CDD bHLH_AtILR3_like 80 155 - -
Phco9g01611 236 Coils Coil 123 178 - -
Phco9g01611 236 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 79 151 IPR036638 GO:0046983
Phco9g01611 236 Gene3D - 65 124 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g01611 Phco-Chr9 37821840 37825108 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phco9g01611 HLH 4e-10 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco9g01611 9 37821840 37825108 Phco9g01611 9 37821840 37825108 ECH
Phco10g01029 10 30787238 30789059 Phco9g01611 9 37821840 37825108 PCT