Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g01489 ATGGAAGAGACACGAGAAGATGCAGGGCCAGCAGAGCGAAGGCCATCAAACATGTCATGGTGGCCTTCAGACTTTGTTGAAAATTTTGAATCCGTTTCCTTGAGCTCGCAAGATCAAACCTTAAATAATAAAGAATTATCAGGACGTTCTAACCAAGATGTTATGTCACCTCAAAAGGCGTCACAAATTCTCTGGCGCACTGGAATGCTTTCTGAACCAATACCCAATGGTTTTTATTCAGTTATTCCAGAGAAAAGACTCAAGAAATTTTTTGATAGTATTCCTACTTTGGATGAGCTTCAAGCTTTGGGTGGAGAGGGTTTTAGGGCTGATGTCATTGTTGTGGATTCAGAGAAAGATAGAAGGTTATCTATGTTGAAGCAACTAATTGTGGCATTGGTTAAAGGATTAAATTCAAATCCACCTGCAATGATTAAGAAGATAGCTGGATTAGTTTCTGACTTTTATAAGCGACCAAATGTAGAAAGTCCAGTGAAAGCTACAGTTGAGGAATCCTCCCACATGTTTGAGAATCATGGTGTCCAGATGCTGGGGCAAATAAGGCATGGTTCATGCCGTCCTCGAGCTATCTTATTTAAAGTATTAGCAGATACTGTAGGTCTGGAAAGTAGGCTTATGATGGGTTTTCCCAATGATGGGGCTGCTGAATGTGTGGACTCCTACAAGCATATGTCAGTGATAGTTGTGTTAAATTCCATGGAATTGCTGGTTGATCTTATGCGTTTTCCTGGCCAACTATTGCCACGATCAACAAAATCAATTCTTATGACACACGTTTCTGCAGCTGGAGAGAGTGATTCTGCAGAAAATGATTCATGTGATTCACCATTAGAACCAAATAGTCCTTTATATGGGGTTTCAGAGAGTGTTGAAAAGGAGGAAAGCCTTCAATTCCACAGAAGATTTGAAGTATCTTCAAATGTATCAGGCCTTCCCCTGCGAAATATGATGTTACGATCAAATACCAGTCTGGAAAGAAATTTGAGTTTTTCACATAGTGAACCCAACATTGCAACTGCATTTGGTCGGCGGAGTCGGAGAAAGGTCATTGCTGAACATAGGACTGCTAGTTCAAGTCCAGAACATCCATCATTGCCAGCACATGGACTGTCTAAGCTTAGTGGCGACAGAACTGCTTTTAGAGATTTTGCTGATGATCAGTCTACTCCAAGATCCAGTTATAAGTCAGATGGTGCTTCCTCATCAGAAGTTCGTAGAATACGAAGAAGAAGTATCAGCATTACACCAGAGATTGGTGATGATATTGCAAGGGCTGTACGGGCAATGAATGAAACACTGAAGCAAAATCGTCTTTTGAGAGAGCAAGGGGGAGTTGATAGTTCATTGTTCCATTTGTCAAATGATAGAGCCGGCAGTATGGATCTTCAGAAAAAAAAGTCAAGTTTCCATCTTGATGGTCATCAAGAGAGGTCCCCATTGTATTCACCACACTGTGACCCTGTAACGTCTCAAAAGGCAATGTCATTACCCTCTTCCCCGCACGATTATAGAGGACAAGCATCCGAGAGAAGCGAAGTGTCAGAATATCCAATGAATGATGAATTGGAGTCTACTTGGAATAAAGTCCTTGAATCACCAATGTTCAATGATAGACCTCTGTTGCCATATGAAGAATGGAATATCGATTTCACAGAATTGACTGTTGGAACTCGTGTTGGGATTGGGTTCTTCGGAGAAGTTTTCCGTGGCATATGGAATGGCACAGATGTCGCAATCAAAGTTTTCCTAGAGCAAGATTTAACTGCTGAAAACATGGAAGATTTCTGCAATGAGATATCCATTCTCAGCCGGCTCCGACATCCTAATGTTATCTTATTTCTTGGTGCATGCACAAAGCCCCCACGCTTGTCAATGGTGACCGAATACATGGAGATGGGCTCTTTGTTTTACTTGATTCATGTGAGTGGTCAAAAGAAGAAGCTTAGTTGGCGGAGAAGACTAAAGATGTTGCGGGACATATGCCGGGGCCTAATGCACATACATCGTATGAAGATTATTCACCGTGATGTGAAAAGTGCAAATTGTCTTGTGGACAAGCATTGGACGGTGAAAATATGTGATTTTGGACTTTCAAGAATAATAGAAGATTCTCCCATGAGAGATTCCTTGTCAGCTGGAACCCCGGAATGGATGGCTCCTGAACTTGTTCGAAATGAACCATTCACTGAAAAATGTGATATATTCAGCCTGGGGGTCATAATGTGGGAGCTCTGCACCTTGAGTAGGCCATGGGAAGGCGTGCCTCCGGAGAGGGTAGTTTATACCGTTGCTAACGAGGGTTCTCGATTGGATATTCCTGAAGGCCCGCTAGGCAGGCTGATTTCAGAGTGTTGGGCGGAACCACATGAACGGCCAAGTTGTGAGGAGATCCTCTCTCGCTTGGTGGACATCCAGTACTCTCTGTTTTGA 2451 0.4264 MEETREDAGPAERRPSNMSWWPSDFVENFESVSLSSQDQTLNNKELSGRSNQDVMSPQKASQILWRTGMLSEPIPNGFYSVIPEKRLKKFFDSIPTLDELQALGGEGFRADVIVVDSEKDRRLSMLKQLIVALVKGLNSNPPAMIKKIAGLVSDFYKRPNVESPVKATVEESSHMFENHGVQMLGQIRHGSCRPRAILFKVLADTVGLESRLMMGFPNDGAAECVDSYKHMSVIVVLNSMELLVDLMRFPGQLLPRSTKSILMTHVSAAGESDSAENDSCDSPLEPNSPLYGVSESVEKEESLQFHRRFEVSSNVSGLPLRNMMLRSNTSLERNLSFSHSEPNIATAFGRRSRRKVIAEHRTASSSPEHPSLPAHGLSKLSGDRTAFRDFADDQSTPRSSYKSDGASSSEVRRIRRRSISITPEIGDDIARAVRAMNETLKQNRLLREQGGVDSSLFHLSNDRAGSMDLQKKKSSFHLDGHQERSPLYSPHCDPVTSQKAMSLPSSPHDYRGQASERSEVSEYPMNDELESTWNKVLESPMFNDRPLLPYEEWNIDFTELTVGTRVGIGFFGEVFRGIWNGTDVAIKVFLEQDLTAENMEDFCNEISILSRLRHPNVILFLGACTKPPRLSMVTEYMEMGSLFYLIHVSGQKKKLSWRRRLKMLRDICRGLMHIHRMKIIHRDVKSANCLVDKHWTVKICDFGLSRIIEDSPMRDSLSAGTPEWMAPELVRNEPFTEKCDIFSLGVIMWELCTLSRPWEGVPPERVVYTVANEGSRLDIPEGPLGRLISECWAEPHERPSCEEILSRLVDIQYSLF 816
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g01489 816 ProSitePatterns Serine/Threonine protein kinases active-site signature. 679 691 IPR008271 GO:0004672|GO:0006468
Phco9g01489 816 SUPERFAMILY Protein kinase-like (PK-like) 534 808 IPR011009 -
Phco9g01489 816 Coils Coil 429 449 - -
Phco9g01489 816 MobiDBLite consensus disorder prediction 492 520 - -
Phco9g01489 816 ProSiteProfiles Protein kinase domain profile. 560 816 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco9g01489 816 MobiDBLite consensus disorder prediction 492 511 - -
Phco9g01489 816 CDD STKc_MAP3K-like 566 808 - -
Phco9g01489 816 SMART serkin_6 560 809 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco9g01489 816 Gene3D Transferase(Phosphotransferase) domain 1 639 815 - -
Phco9g01489 816 MobiDBLite consensus disorder prediction 358 415 - -
Phco9g01489 816 Pfam Protein tyrosine and serine/threonine kinase 561 808 IPR001245 GO:0004672|GO:0006468
Phco9g01489 816 MobiDBLite consensus disorder prediction 392 407 - -
Phco9g01489 816 ProSitePatterns Protein kinases ATP-binding region signature. 566 587 IPR017441 GO:0005524
Phco9g01489 816 Pfam Ethylene-responsive protein kinase Le-CTR1 58 253 - -
Phco9g01489 816 FunFam Serine/threonine-protein kinase isoform 1 550 638 - -
Phco9g01489 816 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 342 808 - -
Phco9g01489 816 Gene3D Phosphorylase Kinase; domain 1 553 638 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g01489 Phco-Chr9 34794952 34816112 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-1 Phco9g01489 PK_Tyr_Ser-Thr 5.5e-61 CL0016