Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g01484 ATGACTTCTAGATTATCTTCACGAACGAACACAACGAACCCAAGACACAACCATTCCATAACCAGACAAAGACAGACACAAACAAACATGTCCGGTGTGGGACCTGTTTCTCAGGATTGGGAACCCGTCGTCCTCCGCAAGAAAGCTCCCACCGCCGCAGCAAAGAAGGACGAGAAAGCCGTCAACGCCGCCCGCCGCTCTGGCGCCGAAATCGAAACCCAAAAAAAATATAATGCTGGGACTAACAAAGCAGCCTCTAGCAGCACTTCATTGAACACTAAGAGGCTGGATGAGGATACAGAGAATCTAACTCATGAGAAAGTACCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGGACAAGAAACTTACTCAGTCTCAGCTTGCTCAAGCGATCAACGAGAAACCTCAAGTGATCCAGGAATACGAATCAGGGAAGGCCATTCCAAACCAGCAGATAATTGGCAAGTTGGAAAGAGCCCTTGGAACTAAACTGCGTGGCAAGAAATAA 516 0.4709 MTSRLSSRTNTTNPRHNHSITRQRQTQTNMSGVGPVSQDWEPVVLRKKAPTAAAKKDEKAVNAARRSGAEIETQKKYNAGTNKAASSSTSLNTKRLDEDTENLTHEKVPTELKKAIMQARMDKKLTQSQLAQAINEKPQVIQEYESGKAIPNQQIIGKLERALGTKLRGKK 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g01484 171 Pfam Multiprotein bridging factor 1 38 108 IPR013729 -
Phco9g01484 171 MobiDBLite consensus disorder prediction 50 72 - -
Phco9g01484 171 FunFam Multiprotein bridging factor 1 100 171 - -
Phco9g01484 171 PANTHER ENDOTHELIAL DIFFERENTIATION-RELATED FACTOR 1 MULTIPROTEIN BRIDGING FACTOR 1 38 171 - -
Phco9g01484 171 Pfam Helix-turn-helix 116 167 IPR001387 -
Phco9g01484 171 MobiDBLite consensus disorder prediction 74 93 - -
Phco9g01484 171 Gene3D - 100 171 IPR010982 GO:0003677
Phco9g01484 171 CDD HTH_XRE 114 167 IPR001387 -
Phco9g01484 171 ProSiteProfiles Cro/C1-type HTH domain profile. 116 170 IPR001387 -
Phco9g01484 171 MobiDBLite consensus disorder prediction 1 102 - -
Phco9g01484 171 SMART mbf_short4 115 170 IPR001387 -
Phco9g01484 171 SUPERFAMILY lambda repressor-like DNA-binding domains 110 167 IPR010982 GO:0003677
Phco9g01484 171 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g01484 Phco-Chr9 34628473 34631321 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR MBF1 Phco9g01484 MBF1 7.6e-24 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco9g01484 9 34628473 34631321 Phco9g01484 9 34628473 34631321 ECH
Phco10g01101 10 32665972 32668994 Phco9g01484 9 34628473 34631321 PCT