Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g01478 ATGGCCTCCATGCCCATGGGGCACCACCACCACCACCACCACCACCAACCGCCGCCACCGGCGTTGCCTTTGCAGCCCTCACAAACGCAGCAGTCTCAGCCGCAACCCGAAGTGCCACGCCGGAGCTCCGATATGGAGACCGATAAGGATATGTCAGCCACTGTCATTGAGGGGAATGATGCGGTCACAGGCCACATAATCTCCACCACTATTGGAGGCAAAAATGGGGAACCTAAACAAACCATCAGTTACATGGCAGAACGTGTTGTTGGCACTGGATCGTTTGGAGTTGTTTTCCAGGCAAAGTGCTTGGAGACTGGAGAGCCAGTGGCTATTAAAAAGGTCTTGCAAGACAGGCAATACAAAAATCGTGAATTGCAGTTAATGCGCTTAATGGATCACCCAAATGTAATTTCCCTGAAGCACTGTTTCTTCTCCACAACAAGCAGAGATGAACTTTTTCTAAACTTAGTAATGGAATATGTACCTGAGACAATGTACCGAGTTATAAAGCACTACAATACTATGAACCAGAGGATGCCTCTCATCTTTGCAAAACTGTACACATATCAAATCTTTAGGGGATTAGCATATATCCATACCACACTGGGAGTTTGCCATAGGGACGTGAAGCCTCAAAATCTATTGGTTCACCCACTTACTCACCAAGTTAAGCTTTGTGATTTTGGGAGCGCCAAAGTTCTGGTCAAGGGTGAATCAAACATTTCATACATATGTTCACGTTACTATCGGGCTCCAGAACTAATATTTGGTGCAACGGAATACACAGCTTCTATTGATATCTGGTCAGCTGGTTGTGTTCTTGCTGAACTTCTTCTAGGACAGCCACTATTTCCAGGAGAAAATCAGGTGGATCAACTTGTGGAAATAATTAAGGTTCTCGGTACCCCAACACGAGAGGAAATTCGTTGCATGAACCCAGAATATACAGATTTTAGATTCCCTCAGATTAAAGCTCATCCTTGGCACAAGGTTTTCCATAAGCGAATGCCTCCGGAAGCAATTGACCTTGCATCAAGGCTTCTCCAATATTCACCTAGTCTCCGATGCACTGCGCTGGAAGCATGTGCACATCCTTTCTTTGACGAGCTTCGGGAGCCAAATGCTCGCCTACCTAATGGCCGTCCATTGCCCCCGCTTTTCAACTTTAAACAGGAATTAGCTGGAGTATCACCTGAACTGGTCAATAGGCTCATCCCAGAGCATATTAGACGGCAGACTGGTCTCAGCTCCCCTCATTCTGCCGGTACATAA 1275 0.4643 MASMPMGHHHHHHHHQPPPPALPLQPSQTQQSQPQPEVPRRSSDMETDKDMSATVIEGNDAVTGHIISTTIGGKNGEPKQTISYMAERVVGTGSFGVVFQAKCLETGEPVAIKKVLQDRQYKNRELQLMRLMDHPNVISLKHCFFSTTSRDELFLNLVMEYVPETMYRVIKHYNTMNQRMPLIFAKLYTYQIFRGLAYIHTTLGVCHRDVKPQNLLVHPLTHQVKLCDFGSAKVLVKGESNISYICSRYYRAPELIFGATEYTASIDIWSAGCVLAELLLGQPLFPGENQVDQLVEIIKVLGTPTREEIRCMNPEYTDFRFPQIKAHPWHKVFHKRMPPEAIDLASRLLQYSPSLRCTALEACAHPFFDELREPNARLPNGRPLPPLFNFKQELAGVSPELVNRLIPEHIRRQTGLSSPHSAGT 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g01478 424 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 48 413 - -
Phco9g01478 424 Pfam Protein kinase domain 84 368 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco9g01478 424 ProSitePatterns Serine/Threonine protein kinases active-site signature. 205 217 IPR008271 GO:0004672|GO:0006468
Phco9g01478 424 Gene3D Phosphorylase Kinase; domain 1 69 163 - -
Phco9g01478 424 SUPERFAMILY Protein kinase-like (PK-like) 83 392 IPR011009 -
Phco9g01478 424 MobiDBLite consensus disorder prediction 1 47 - -
Phco9g01478 424 ProSiteProfiles Protein kinase domain profile. 84 368 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco9g01478 424 MobiDBLite consensus disorder prediction 1 17 - -
Phco9g01478 424 CDD STKc_GSK3 79 371 IPR039192 -
Phco9g01478 424 SMART serkin_6 84 368 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco9g01478 424 MobiDBLite consensus disorder prediction 26 40 - -
Phco9g01478 424 FunFam Shaggy-related protein kinase kappa 164 411 - -
Phco9g01478 424 ProSitePatterns Protein kinases ATP-binding region signature. 90 114 IPR017441 GO:0005524
Phco9g01478 424 FunFam Glycogen synthase kinase-3 beta 68 163 - -
Phco9g01478 424 Gene3D Transferase(Phosphotransferase) domain 1 164 411 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g01478 Phco-Chr9 34446791 34451180 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Phco9g01478 Pkinase 1.5e-63 CL0016