Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g01444 ATGCTGAGAAAGATGGATGAAGGAGAAATCATCACAAATGCTTTTCCTCAGAACCTAACTGCTTCTGCTGCATCAAATAGTAACAATCCTTCTCCTGCTTCGAAGAGGAAGAGAAACCTCCCAGGAAACCCAGATCCTGAAGCTGAAGTTGTAGCCTTATCACCAAAGACACTCATGGCTACCAACAGATTCTTGTGTGAAACTTGTGGGAAAGGTTTCCAGAGGGATCAAAATCTTCAACTCCATCGACGAGGACACAACCTTCCTTGGAAGCTTAAGCAGAGAACGGGGAAGGAAGCAAGGAAGAGGGTTTATGTGTGTCCAGAGAAAAGTTGTGTGCACCACGACCCTTCAAGGGCTCTTGGAGATTTAACTGGGATAAAGAAGCACTTTTGTAGAAAGCACGGTGAAAAGAAGTGGAAGTGCGAGAAGTGCTCAAAGCGTTATGCGGTGCAGTCGGATTGGAAAGCACACTCCAAGACCTGTGGCACCAGAGAATACAAATGTGACTGTGGAACTATCTTTTCAAGGAGGGACAGTTTCATCACTCACAGGGCCTTCTGTGATGCTTTGGCAGAAGAAACAGCAAGGGTAAATGCATCGTCTGACATTAACGCTTCTTTAGGGCGTAACATTGGTTACAACGTAATTGGAACTTCCCTAGGCCCTAACATGGCAACCCATTTTTCTTCAATTTTCAAGCCAGTTTCAAGCACAGAAGAAACAAGCAATCAAACATCTAGGGGACTACCCCTTTGGATGGGTCAAACATCTCCTCAGGCTCAAGAAACAATGGTCAAGAACAATTTGAGTGAGATTCATCAACTTGGGTCTGCCACAAGCTCAGCAACAGCATATGGTGGCAACTCACTAGTCCAATGCTCAAATTTTCCACCTTCAAACTATCAACTAAGTTGGGTGTTTGGAACTAAACTTTCCAATGAGAGTAACATCCAAAAGCTAACAACAAGCACAACTACATCACTTCCCCTAGGCAACTCGAGTGTTCCTTCTTTGTATAGTTCCCAACACCAACACCAACCTCACCAAACATGTTCAACAGCAAACATGTCAGCCACAGCTTTGTTGCAAAAAGCTGCTCAAATCGGATCAAGCTCAAGTGACCCTTCATGGCTGGGGAGCATAGGTTTGAAATGTGGTAGCAGTACCCAAGGTCAAGATGGGAATAGCAGTAACAAGTTTAGTGGCATGTATGGTTCAAGTTTAGTTCTCAGCACTCTTGGGACTGAACCAGATAACTCTGCATGTGACTTGTCACAAATGCACCCTCCCAAACGTAGACACGTACTCAATGAAGAAAATGGAGGGGGGCAATTTAGGGATTTCCTTGGTGTTGGTGTGCAAAACCATTTGCCGCAGTTCATCAATCAACGGGTGGATTTGATTTGA 1410 0.4461 MLRKMDEGEIITNAFPQNLTASAASNSNNPSPASKRKRNLPGNPDPEAEVVALSPKTLMATNRFLCETCGKGFQRDQNLQLHRRGHNLPWKLKQRTGKEARKRVYVCPEKSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYKCDCGTIFSRRDSFITHRAFCDALAEETARVNASSDINASLGRNIGYNVIGTSLGPNMATHFSSIFKPVSSTEETSNQTSRGLPLWMGQTSPQAQETMVKNNLSEIHQLGSATSSATAYGGNSLVQCSNFPPSNYQLSWVFGTKLSNESNIQKLTTSTTTSLPLGNSSVPSLYSSQHQHQPHQTCSTANMSATALLQKAAQIGSSSSDPSWLGSIGLKCGSSTQGQDGNSSNKFSGMYGSSLVLSTLGTEPDNSACDLSQMHPPKRRHVLNEENGGGQFRDFLGVGVQNHLPQFINQRVDLI 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g01444 469 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 23 454 IPR031140 -
Phco9g01444 469 MobiDBLite consensus disorder prediction 14 47 - -
Phco9g01444 469 MobiDBLite consensus disorder prediction 14 36 - -
Phco9g01444 469 ProSitePatterns Zinc finger C2H2 type domain signature. 66 86 IPR013087 -
Phco9g01444 469 Gene3D Classic Zinc Finger 60 87 - -
Phco9g01444 469 FunFam protein indeterminate-domain 5, chloroplastic-like 118 197 - -
Phco9g01444 469 Gene3D Classic Zinc Finger 97 188 - -
Phco9g01444 469 FunFam protein indeterminate-domain 12-like 43 111 - -
Phco9g01444 469 SUPERFAMILY beta-beta-alpha zinc fingers 63 160 IPR036236 -
Phco9g01444 469 ProSiteProfiles Zinc finger C2H2 type domain profile. 64 86 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g01444 Phco-Chr9 33194891 33197414 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Phco9g01444 None None None