LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phco9g01433	ATGCTTGCCGTGGCACCTTTGAGGAGCATCAAAGATGAAAAGAACCAAGGAGAGACGGAGGGTTTCTCGATGGCTACAGCAACAACACCAGATGATGTTGACTTTGTTGACCTTTCTGAAGGGAACTTGTTGGAGAGCATCAACTTCGACGACCTCTTCGTCGGCATCGACGTTGACGGAGATGTATTGCCGGACTTGGAGATGTTTGGTGAGTTTTCCGTCAGCGCCGGTGAAGAGTCATCGGAGATGAACTCATCAGCAGAGAACACCAAGGAGGAAAATGATCAAAATTGTGTTATCACTGCTTCAAAGACGGAAGAGGAAGATAAAAGTTCTTGTGCTGCTTCACGTCAAGACTCGGGGTCAAACCCAGGAGAGGAGATAGTGAGCAATAAGAATGGTGAATCCGTGGTGGTGAATCCGGCTCCAAAGGAAGGTGGAAAAGGAAAAAAATCTTCATCGGCTCAACTGAAGAATAATAGTAATAGTAATAATCCTCAAGGGAAGAGAAAACTGAAGGTGGATTGGACCCCTGAATTGCACAGGAGATTTGTGCAAGCTGTGGAACAGCTAGGAGTGGACAAGGCAGTGCCTTCAAGGATTTTGGAGATTATGGGAATTGATAGTCTCACTCGTCATAACATTGCTAGCCACCTTCAAAAATATAGATCTCATAGGAAACACTTGCTGGCTCGTGAGGCTCAAGCAGCAAGTTGGAGTCAAAGAAGGCACATATATGGTGTTGGTGGAAATGGAGGGAAGAGAGAGGGGAGTCCATGGCTAGCACCCACCATGGGATTCCCTCCTCCAATGACCACAATGCACCATTTTAGACCTCTGCATGTATGGGGACACCCCTCCACGGACCACTCCTTCATGCACATGTGGCCCAAACATCTTCCACCTTCACCACCACTCTCATGGCCATCACCTGCACCACCCCAAGACCCTTCTTTTTGGCACCAACGGGCTCCAACTGCACTAATACCCGGAACAGCTTGTTTCCCACAACCTCTGACACCAACGGGTTTTGGAACTCACCTTGTCCCTGGCATCCCACCCCATGCCATGTACAAAGTAGATCAAAGCATTGGCATCCAGGGTCCCCATCCCCTACTAGATTTTCATCCGTCAAAAGAGTGCATAGATGCAGCTATTGGAGATGTTTTATCAAAGCCATGGCTGCCCTTACCTCTTGGACTGAAGGCTCCAGTAATTGATAGTGTGATGAGTGAATTACAGAGACAAGGGATTCCAAACATTCCACCAACTAGTGCTTGA	1281	0.4785	MLAVAPLRSIKDEKNQGETEGFSMATATTPDDVDFVDLSEGNLLESINFDDLFVGIDVDGDVLPDLEMFGEFSVSAGEESSEMNSSAENTKEENDQNCVITASKTEEEDKSSCAASRQDSGSNPGEEIVSNKNGESVVVNPAPKEGGKGKKSSSAQLKNNSNSNNPQGKRKLKVDWTPELHRRFVQAVEQLGVDKAVPSRILEIMGIDSLTRHNIASHLQKYRSHRKHLLAREAQAASWSQRRHIYGVGGNGGKREGSPWLAPTMGFPPPMTTMHHFRPLHVWGHPSTDHSFMHMWPKHLPPSPPLSWPSPAPPQDPSFWHQRAPTALIPGTACFPQPLTPTGFGTHLVPGIPPHAMYKVDQSIGIQGPHPLLDFHPSKECIDAAIGDVLSKPWLPLPLGLKAPVIDSVMSELQRQGIPNIPPTSA	426

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phco9g01433	426	MobiDBLite	consensus disorder prediction	1	26	-	-
	Phco9g01433	426	MobiDBLite	consensus disorder prediction	115	137	-	-
	Phco9g01433	426	Pfam	Myb-like DNA-binding domain	174	223	IPR001005	-
	Phco9g01433	426	NCBIfam	myb-like DNA-binding domain, SHAQKYF class	171	225	IPR006447	GO:0003677
	Phco9g01433	426	SUPERFAMILY	Homeodomain-like	170	228	IPR009057	-
	Phco9g01433	426	FunFam	Two-component response regulator	167	230	-	-
	Phco9g01433	426	MobiDBLite	consensus disorder prediction	75	174	-	-
	Phco9g01433	426	PANTHER	TRANSCRIPTION ACTIVATOR GLK1	1	425	IPR044825	GO:0003700\|GO:0045893
	Phco9g01433	426	MobiDBLite	consensus disorder prediction	152	170	-	-
	Phco9g01433	426	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	168	227	IPR017930	-
	Phco9g01433	426	Gene3D	-	168	229	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phco9g01433	Phco-Chr9	32271901	32276674	Dispersed/Transposed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	GARP-G2-like	Phco9g01433		Myb_DNA-binding	4.2e-09	CL0123