Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Phco9g01398 | ATGGCTCAATTGCCACCAAAAATTCCAAACATGACACCCAATTGGTCAGACTTTTCTTCTCCTCACCAAAAGATGCCTTCCCTAAAAACCATGGCACCAAACATGTCAAACCAAAACCCTTCATGGGTGGATGAGTTTCTAGACTTCTCAACAGCTAGACGCGGTGCTCACCGGCGCTCGGTGAGCGACTCCATCGCCTTCCTTGAGGCACCAATGCTGGATCATCACTGTAAAAGTCGTGGGAGTGAAGGTGGTGACAATGAGAACGAGTTCGAGAGGTTTGATGATGAACAATTCATGTCCATGTTTAGTGATGAGGCTTCAGGGAATAATAACAATAACAATAATAATAATAACACCATCATGGCACTTTCCTCCTCCAACCCTTCTACACCCTCTGATCACAACAGCATCAACGATGAGAAGGAGATGAACACGGAAAAGGAGGAGGAGCAAGAGCAGAAGCAAGTGAAGAATGAGTCAGATGAGGATGAAAGCCAATGCAAGCAAGAAATCACACAAACCCCCGATGATGGTAATAATAGTAACGCAAATGCAACAACTTTTTCCAGTGAGAAAATCACAGACCCAAAGAGGGTCAAAAGAATCTTGGCAAATAGACAATCGGCACAAAGATCAAGAGTGAGGAAGCTGCAATACATATCTGAGCTTGAACGAAGTGTGACTTCATTACAGGCCGAAGTTTCTGTATTGTCTCAACGAGTTTCATTTTTGGATCATCAACGTTTGCTTCTAAATGTTGACAACAGTGGTTTGAAGCAAAGAATCGCTGCGCTGGCCCAAGACAAGATCTTCAAAGATGCACATCAAGAAGCACTGAAGAGGGAGATAGAGAAACTGAGGAAAGTGTATCACCAACAAAACAAAAAGAAGATGGACAATGTTGCAGGGTCACCATCCCAATCCCCATTTCCATCTCCAAAACCACGATGTGATACAGACACTGAGAATGAACAGCTTATCAATGTTTGA | 993 | 0.434 | MAQLPPKIPNMTPNWSDFSSPHQKMPSLKTMAPNMSNQNPSWVDEFLDFSTARRGAHRRSVSDSIAFLEAPMLDHHCKSRGSEGGDNENEFERFDDEQFMSMFSDEASGNNNNNNNNNNTIMALSSSNPSTPSDHNSINDEKEMNTEKEEEQEQKQVKNESDEDESQCKQEITQTPDDGNNSNANATTFSSEKITDPKRVKRILANRQSAQRSRVRKLQYISELERSVTSLQAEVSVLSQRVSFLDHQRLLLNVDNSGLKQRIAALAQDKIFKDAHQEALKREIEKLRKVYHQQNKKKMDNVAGSPSQSPFPSPKPRCDTDTENEQLINV | 330 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Phco9g01398 | 330 | MobiDBLite | consensus disorder prediction | 136 | 171 | - | - | |
| Phco9g01398 | 330 | MobiDBLite | consensus disorder prediction | 9 | 25 | - | - | |
| Phco9g01398 | 330 | ProSitePatterns | Basic-leucine zipper (bZIP) domain signature. | 201 | 216 | IPR004827 | GO:0003700|GO:0006355 | |
| Phco9g01398 | 330 | CDD | bZIP_plant_RF2 | 199 | 249 | IPR044759 | GO:0003700|GO:0006355 | |
| Phco9g01398 | 330 | SUPERFAMILY | Leucine zipper domain | 198 | 252 | IPR046347 | GO:0003700|GO:0006355 | |
| Phco9g01398 | 330 | PANTHER | BASIC LEUCINE ZIPPER 34 | 1 | 317 | - | - | |
| Phco9g01398 | 330 | MobiDBLite | consensus disorder prediction | 292 | 330 | - | - | |
| Phco9g01398 | 330 | Pfam | Basic region leucine zipper | 195 | 243 | IPR004827 | GO:0003700|GO:0006355 | |
| Phco9g01398 | 330 | Coils | Coil | 138 | 167 | - | - | |
| Phco9g01398 | 330 | MobiDBLite | consensus disorder prediction | 172 | 193 | - | - | |
| Phco9g01398 | 330 | SMART | brlzneu | 194 | 258 | IPR004827 | GO:0003700|GO:0006355 | |
| Phco9g01398 | 330 | Coils | Coil | 277 | 297 | - | - | |
| Phco9g01398 | 330 | Gene3D | - | 197 | 249 | - | - | |
| Phco9g01398 | 330 | MobiDBLite | consensus disorder prediction | 104 | 194 | - | - | |
| Phco9g01398 | 330 | MobiDBLite | consensus disorder prediction | 104 | 135 | - | - | |
| Phco9g01398 | 330 | FunFam | Transcription factor VIP1 | 197 | 268 | - | - | |
| Phco9g01398 | 330 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
| Phco9g01398 | 330 | Coils | Coil | 221 | 241 | - | - | |
| Phco9g01398 | 330 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 196 | 248 | IPR004827 | GO:0003700|GO:0006355 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Phco9g01398 | Phco-Chr9 | 26005353 | 26007578 | Dispersed/Transposed |
Transcription factors information