Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g01369 ATGACTCAACCTGGCAGACTCAAGAATATGACATCACGATATGACCTTGGAATTCAACCCTCTTCAACCAAGGTTGAAAGAAGGCTCATTGAGAAAAACAGAAGAAACCAGATGAAGATCCTCTTCAACAAACTCAATTCTCTTCTCCCTAGCTATAACCCCAAGGAAGTATTGTCACTGCCCGACAGAGTGGATGAGGCAATCAACTACATCAAGAGTTTGGAGGCGAAGGTGAAGATGGCACAAGAGAAGAAAGAGAGTTTGCAGGGTATTAAGAAAAGACCCCGCGGTTGCTTCTCCAGTAGCAGAGCGAATTTTGCGGCAACACGTCTCCCAAAATCTCCACAACTTGAGATTCAAGAAGTGGGTTCCTCCCTACAAGTCGTTCTGATTACTGGGATAGACCACCAGTTCATTTTCTGTGAAATTATTCGAATGCTGCATGAAGAGAACATAGAGGTTAGAAGTGCCAATTCCTCACTCAGTGGAGACTCGGTGCTTCATGTTGTGCATGCTGAGATTCCTCAATCTTTTCTTCAATTGGGAGCCACCAAAGTAAGTGAGAGGTTGAAAAGGTTTGTAAATGGATCCAACAGTGACGTTGAAACACAACACGAGTGGTGGGATTTTGATATTTGTAGTGATGATATGTGGGATTTCTAG 663 0.4344 MTQPGRLKNMTSRYDLGIQPSSTKVERRLIEKNRRNQMKILFNKLNSLLPSYNPKEVLSLPDRVDEAINYIKSLEAKVKMAQEKKESLQGIKKRPRGCFSSSRANFAATRLPKSPQLEIQEVGSSLQVVLITGIDHQFIFCEIIRMLHEENIEVRSANSSLSGDSVLHVVHAEIPQSFLQLGATKVSERLKRFVNGSNSDVETQHEWWDFDICSDDMWDF 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g01369 220 Pfam Helix-loop-helix DNA-binding domain 25 75 IPR011598 GO:0046983
Phco9g01369 220 Coils Coil 64 91 - -
Phco9g01369 220 Gene3D - 18 98 IPR036638 GO:0046983
Phco9g01369 220 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 21 90 IPR036638 GO:0046983
Phco9g01369 220 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 21 194 - -
Phco9g01369 220 SMART finulus 28 80 IPR011598 GO:0046983
Phco9g01369 220 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 22 74 IPR011598 GO:0046983
Phco9g01369 220 FunFam Transcription factor bHLH162 16 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g01369 Phco-Chr9 18119145 18120383 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phco9g01369 HLH 7e-08 No_clan