Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g01361 ATGCGGCAGCAAGAGGATCACGAAGAAAAGAAGAAATCAATGTCACTGGAGGCTCTGAAGGAAACTCTGCGACCTTGTTCAACCCAAGAGCCTTCTTCCTCTTCTGCAATTACCCAAACACAGCGCAATTCAATTCTTAGCCACTACGATTCCCTCTTTCCGATCCACAGAAAACCCCCAAAATCCTCTCTTTCCGACCAGCTTCGCCGCCTTAACGACTCACTATCTCCATCACACTCCAAAACCCTACAGCAAGAAAAAGAAAAAGAGGAAGTACTACAAGAAGAAGAACCTGAGATAGAGAGAGCGAAATTCGCTTCAGTTAAATTGCCACAATTTCAATTTGATCACACTGGACCCTTTGAGCCTCTCCTCCTGTCTTCGCATGGAGAATTTCCTGTGGTTCAGGTTCCTGCATCTATAAACTGTAGACTGCTTGAGCATCAAAGAGAGGGTGTGAGGTTTTTGTATGGTTTGTACAAGAACAATCATGGAGGCATGCTTGGAGATGACATGGGTCTTGGGAAGACCATTCAAGCAATAGCATTTCTCGCTGCTGTCTTTGGTAAAGGATATTCTACTCTAAATGAAAACCAGATACAGAAAAGAGACCCTGCATTAATAATATGCCCAACATCTGTTATCCACAACTGGGATAGCGAATTCTCTAAGTGGTCTAACTTCAGTGTTTCCATTTATCATGGTGCAAATCGGGATCTGATATTTGATAAATTGGAAGCAAATGGAGTGGAGATACTTATTACCAGTTTTGACACATACAGGATTCATGGAAGTTCCTTGTCAGATGTCAAATGGAATGTTGTGATTATTGATGAGGCTCATCGACTTAAGAATGAGAAATCAAAACTCTATAAAGCATGTTTAGAAATTAAAACCCTAAGACGCTATGGTCTCACTGGGACTGTAATGCAAAATAAAATAATGGAACTGTTCAATCTCTTTGACTGGGTTTCACCTGGATCCCTTGGAACACGGGAACACTTTCGTGACTTCTATGATGAACCCCTCAAGCATGGGCAGAGGTCAACTGCTCCTGATAGGTTTGTCCAAATTGCTATTAAGAGAAAACAATACCTTGTGGAAGTTCTTCGTAAATATATGTTGAGAAGGACAAAGGAAGAGACCATTGGGCACCTTATGATGGGGAAGGAAGATAACATCGTGTTTTGTGCAATGAGTGATCTGCAAAAACGTATTTACAGGAGAATGTTACAGCTTCCTGACATTCAATGCCTTATAAATAAGAACTTGCCTTGTAGTTGTGGTAGCCCTCTTACTCAAGTCGAATGTTGCAAGAGGATAGTACCAGATGGAGTTATTTGGCCTTACCTGCATAGAGATAACCCTGACGGTTGTGATTCATGCCCCTTTTGCCTTGTCCTTCCATGCCTTGTCAAGCTCCAACAGATAAGCAATCACCTTGAGCTTATCAAACCAAACCCCAAAGATGACCCTGACAAACAAAGTAAAGATGCAGAGTTTGCTGCTGCTGTCTTTGGCACTGATATTGATTTAGTGGGTGGGAAAACACAAAATGAAAGTTTCATGGGTTTAAGCGATGTGAAACATTGTGGCAAAATGCGAGCGCTTGAGAAGCTATTGTTCTCATGGAATTCACAGGGTGACAAAGTTCTTTTGTTTAGCTATTCTGTAAGGATGCTAGACATACTGGAGAAATTTCTCATTCGAAAAGGCTACAGCTTCTCAAGACTTGATGGGTCCACTCCTACTAATTTACGCCAATCTCTGGTTGATGACTTCAACTCAAGTCCAAGCAAACAGGTATTCCTGATATCAACTCGTGCTGGTGGGCTTGGATTGAACCTTGTCAGTGCAAACCGTGTTGTAATATTTGACCCTAACTGGAACCCTGCTCAAGACTTACAGGCTCAGGACAGGTCCTTTCGATTTGGACAGAAGCGGCATGTCGTGGTGTTCCGTCTTCTTGCAGCTGGTTCACTTGAAGAACTTGTTTACTCACGTCAGGTGTATAAGCAGCAGCTATCGAACATTGCTGTCTCTGGAAAGATGGAAAAACGATATTTTGAAGGTGTCCAGGACTGCAAAGAATTTCAAGGAGAGCTATTTGGTATTTCCAATTTATTCCGAGATTTGTCAGATAGGCTGTTTACCAGTGAGATCGTTGAATTGCATAAAGAACATGGACATGAAAAGGGACAACTGGAAAAAGTAAATCTGTCAGAACAAACAGGTTCATCGGTATCAGAGTCAGAAACCAGATCATCTTATAAATCAGCAGGGAATGCAACAAGTAAACCAGATCTTGAAGACCTTGGCATTGTATATACTCATCGCAATGAAGACATTGTCAACTTTGGAGCAGTGATTCAAGGGAAAATAAATGCCAACATCCCATCGAATAATAGCTTAGTCAAGCCAGGCACTTCTTCGGGTCATCAAAGAAAAAAACCAGAAAAAAGTAAAGTTCCTTTGATTGATGATAGGAAGAGAACCCAATATAAGCTCCTTGCTCAGTCTATGGGCATGGAAGAGCTTGCTTTTAGCAAATGGTTACTATCAGCGACTCCACTGGAGAGAAAAAAAGTGCTTCTTGACTACAAGAAGAAAAAGAAGATGCCTAATGGTTGA 2631 0.4158 MRQQEDHEEKKKSMSLEALKETLRPCSTQEPSSSSAITQTQRNSILSHYDSLFPIHRKPPKSSLSDQLRRLNDSLSPSHSKTLQQEKEKEEVLQEEEPEIERAKFASVKLPQFQFDHTGPFEPLLLSSHGEFPVVQVPASINCRLLEHQREGVRFLYGLYKNNHGGMLGDDMGLGKTIQAIAFLAAVFGKGYSTLNENQIQKRDPALIICPTSVIHNWDSEFSKWSNFSVSIYHGANRDLIFDKLEANGVEILITSFDTYRIHGSSLSDVKWNVVIIDEAHRLKNEKSKLYKACLEIKTLRRYGLTGTVMQNKIMELFNLFDWVSPGSLGTREHFRDFYDEPLKHGQRSTAPDRFVQIAIKRKQYLVEVLRKYMLRRTKEETIGHLMMGKEDNIVFCAMSDLQKRIYRRMLQLPDIQCLINKNLPCSCGSPLTQVECCKRIVPDGVIWPYLHRDNPDGCDSCPFCLVLPCLVKLQQISNHLELIKPNPKDDPDKQSKDAEFAAAVFGTDIDLVGGKTQNESFMGLSDVKHCGKMRALEKLLFSWNSQGDKVLLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPTNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVVVFRLLAAGSLEELVYSRQVYKQQLSNIAVSGKMEKRYFEGVQDCKEFQGELFGISNLFRDLSDRLFTSEIVELHKEHGHEKGQLEKVNLSEQTGSSVSESETRSSYKSAGNATSKPDLEDLGIVYTHRNEDIVNFGAVIQGKINANIPSNNSLVKPGTSSGHQRKKPEKSKVPLIDDRKRTQYKLLAQSMGMEELAFSKWLLSATPLERKKVLLDYKKKKKMPNG 876
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g01361 876 MobiDBLite consensus disorder prediction 65 81 - -
Phco9g01361 876 Pfam Helicase conserved C-terminal domain 533 645 IPR001650 -
Phco9g01361 876 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 536 689 IPR001650 -
Phco9g01361 876 Pfam SNF2-related domain 161 417 IPR000330 GO:0005524|GO:0140658
Phco9g01361 876 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 129 377 IPR027417 -
Phco9g01361 876 MobiDBLite consensus disorder prediction 25 48 - -
Phco9g01361 876 MobiDBLite consensus disorder prediction 82 98 - -
Phco9g01361 876 MobiDBLite consensus disorder prediction 1 98 - -
Phco9g01361 876 MobiDBLite consensus disorder prediction 732 764 - -
Phco9g01361 876 SMART ultradead3 141 335 IPR014001 -
Phco9g01361 876 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 157 327 IPR014001 -
Phco9g01361 876 Coils Coil 83 103 - -
Phco9g01361 876 CDD SF2_C_SNF 527 656 - -
Phco9g01361 876 Gene3D - 389 732 IPR027417 -
Phco9g01361 876 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 381 699 IPR027417 -
Phco9g01361 876 Gene3D - 125 376 IPR038718 -
Phco9g01361 876 MobiDBLite consensus disorder prediction 798 826 - -
Phco9g01361 876 FunFam DNA excision repair protein ERCC-6-like 2 isoform X1 127 376 - -
Phco9g01361 876 MobiDBLite consensus disorder prediction 1 18 - -
Phco9g01361 876 MobiDBLite consensus disorder prediction 738 763 - -
Phco9g01361 876 PANTHER SNF2/RAD54 FAMILY MEMBER 24 812 - -
Phco9g01361 876 SMART helicmild6 562 645 IPR001650 -
Phco9g01361 876 MobiDBLite consensus disorder prediction 812 826 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g01361 Phco-Chr9 17172437 17178694 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Phco9g01361 SNF2_N 9.3e-54 CL0023