Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g01262 ATGGATTGGAAGAGATCTGCTTTGGAGTGCCAGAGAGTAAAGATCTGCAGACAAGTTCTGTTGGGATTTTTGTTGATCTGCACAATTCACACATCAAGTGCTGTCACCGATCCCACTGATGTTGCTGCAATTAATAGCTTCTATATTGCACTGGGATCCCCTGTTCTGCCTGGGTGGGTTGCTAGTGGAGGAGATCCATGTGGAGAAGGGTGGCAAGGCATTCTGTGTAATGGGTCATTCATACAAAAAATAGTTCTGAATGGTGCAAATTTGGGGGGAGAACTGGGAGATAAACTGTCAACTTTTGTTTCAATCTCTGTGATTGATCTAAGCAACAACAACATTGGAGGAAATATTCCATCTAATTTGCCAGTTACCATGAAAAACCTTTTTCTTTCAGACAACCAGTTTACTGGAAGTATTCCGACCTCTTTGTCCACTTTGGCTGGACTGACAGATATGTCTCTTAACTACAATTTCTTAACTGGAGCAATACCAGATGCTTTTCAGTCACTTACGCAGTTGATCAATCTTGATTTATCTCATAATAATTTGAGTGGGGAATTGCCTTCTTCTATGGATAACTTGGCGTCTCTGACCACCCTGCACCTACAAAACAACCAATTGTCCGGGAAACTTGATGTCTTACAAGACCTTCCTCTGAAAGATTTGAATATTGAGAACAACCAGTTTTCTGGCCCAATACCTCCAAAGTTGCTAAGCATCCCAGCCTTCAGGCAAGCTGGAAACCCATTTAATGTTAGTGGTACAACAACTCCTGCTTCTTCACCTCGCTCCCCAGCAATAGCACCACCTGGAACCCCTATTTCTGGTGCACCACCTGGAACTCCCATCTCTGGGGCACCACCATCTTCTGGCCGTGTACCTACTAAACAGGCTGATGGACCAGCTGTAGCAAATGAATCACACTCTGGGAAATCCAAACAATCCACAAAAAGGGTGGTTTGGATATCGATTGGTAGTGTGTTGGGATTCATTATTTTGTTACTAGGATTCATTCTCTTTATTCCAAGATGTAGCAGAAGAGAACGAGATGGTAGAATATCCAAGCAACGCCAAATTGGTGCATATGGGGCTGAAAGGGAAATTGCCAGGGATAACGGGAATTCAGTCCAACCACCTAGTCAAACGGAAAAAGTACCAGTAGGGGATGTTCCAAGACCAAAAGAGGGTCGTCAGGCAGAGACCAGGACAGTCTGGGCTAATCCAAGGCCAAAAGAGGGTCATCAGGCGGAGACCAGGACAGTCTGGGCTAATCCAAATCCACAGAGTGAGCAAGATAAGGATGTGCAGAGAATGACAACAATACCAAAGCCAGAAGAGCATGAGATAGATATCAGTGCACTACAAGTATATTCAATGCCTCCTCCCCCTCCCCCACCTCCCCCACCACCTCCTCCCCCTCCACCACCACCTCCACCTCCACCTCCTACTACTGAAAAGGTGACTGTTGAGCCAGCCACATCCCGCAGAGCAACTAATGTCACTCCGCTCATGAGAAGTTCAGTTCCTCCTACTTTTGCAAAATTTTTTGCTATTGCATCCCTTCAACAGTATACAAATAGCTTTTCTCAAGAAAATCTTATAGGAGGAGGCATGCTGGGTAATGTGTATAGAGCCGAGCTTCCTAATGGCAAGTTACTTGCTGTAAAGAAACTGGACAAGAGAGCTTCTGATAACCAGAAGGATGATGAATTTCTTGAATTGATTAATAGTATTGATAGAATAAGGCATGCAAATGTTGTCGAGCTTGTTGGATACTGTTCTGAGCATGGTCAAAGGCTTCTTATATATGAGTACTGCAGTAATGGGTCACTGTATGATGCACTCCACTCAGATGATGACTTCAAAACAAGACTATCATGGAATGCTCGAATTCGAATAGCTCTTGGGGCAGCTAGAGCCTTAGAATATCTGCACGAGCAATGTCAGCCACCTGTAGTACACAGAAATTTGAAGTCTGCCAATATTCTGCTTGATGATGATCTATCCGTCCAGGTCTCTGATTGTGGTTTAGCTACATTGATAGCTTCAGGATCAGTCAGTCAGCTCTCCGGGAACCTGTTAACTGCTTATGGCTATGGTGCTCCTGAATTTGAGTCTGGAATATACACATACCAAAGTGATGTGTACAGCTTTGGAGTGATCATGTTAGAACTTTTGACTGGTCGTCAGTCCCACGACAGGACACGTCAACGCGGGGAGCAATTTCTGGCCAGATGGGCAATCCCCCAACTTCATGATATCGATGCCTTATCGAGCATGGTCGATCCTTCTTTGAATGGAAATTACCCAGCAAAATCATTGTCAAATTTTGCAGACGTTATCTCTAGATGCCTTCAGTCAGAGCCAGAATTTAGGCCAGCAATGTCCGAGGTTGTCCTATACTTACTAAATATGATAAGGAGGGAGTCTCAGCAAAGTGAATCAAATGAAAAATGA 2463 0.4425 MDWKRSALECQRVKICRQVLLGFLLICTIHTSSAVTDPTDVAAINSFYIALGSPVLPGWVASGGDPCGEGWQGILCNGSFIQKIVLNGANLGGELGDKLSTFVSISVIDLSNNNIGGNIPSNLPVTMKNLFLSDNQFTGSIPTSLSTLAGLTDMSLNYNFLTGAIPDAFQSLTQLINLDLSHNNLSGELPSSMDNLASLTTLHLQNNQLSGKLDVLQDLPLKDLNIENNQFSGPIPPKLLSIPAFRQAGNPFNVSGTTTPASSPRSPAIAPPGTPISGAPPGTPISGAPPSSGRVPTKQADGPAVANESHSGKSKQSTKRVVWISIGSVLGFIILLLGFILFIPRCSRRERDGRISKQRQIGAYGAEREIARDNGNSVQPPSQTEKVPVGDVPRPKEGRQAETRTVWANPRPKEGHQAETRTVWANPNPQSEQDKDVQRMTTIPKPEEHEIDISALQVYSMPPPPPPPPPPPPPPPPPPPPPPPTTEKVTVEPATSRRATNVTPLMRSSVPPTFAKFFAIASLQQYTNSFSQENLIGGGMLGNVYRAELPNGKLLAVKKLDKRASDNQKDDEFLELINSIDRIRHANVVELVGYCSEHGQRLLIYEYCSNGSLYDALHSDDDFKTRLSWNARIRIALGAARALEYLHEQCQPPVVHRNLKSANILLDDDLSVQVSDCGLATLIASGSVSQLSGNLLTAYGYGAPEFESGIYTYQSDVYSFGVIMLELLTGRQSHDRTRQRGEQFLARWAIPQLHDIDALSSMVDPSLNGNYPAKSLSNFADVISRCLQSEPEFRPAMSEVVLYLLNMIRRESQQSESNEK 820
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g01262 820 Gene3D Transferase(Phosphotransferase) domain 1 608 820 - -
Phco9g01262 820 MobiDBLite consensus disorder prediction 421 437 - -
Phco9g01262 820 SUPERFAMILY L domain-like 39 242 - -
Phco9g01262 820 MobiDBLite consensus disorder prediction 459 488 - -
Phco9g01262 820 Gene3D Ribonuclease Inhibitor 38 259 IPR032675 -
Phco9g01262 820 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 495 607 - -
Phco9g01262 820 Pfam Protein tyrosine and serine/threonine kinase 533 802 IPR001245 GO:0004672|GO:0006468
Phco9g01262 820 MobiDBLite consensus disorder prediction 372 440 - -
Phco9g01262 820 ProSiteProfiles Protein kinase domain profile. 530 804 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco9g01262 820 ProSiteProfiles Leucine-rich repeat profile. 198 220 IPR001611 GO:0005515
Phco9g01262 820 MobiDBLite consensus disorder prediction 251 318 - -
Phco9g01262 820 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 608 818 - -
Phco9g01262 820 SUPERFAMILY Formin homology 2 domain (FH2 domain) 473 483 - -
Phco9g01262 820 MobiDBLite consensus disorder prediction 458 506 - -
Phco9g01262 820 MobiDBLite consensus disorder prediction 489 506 - -
Phco9g01262 820 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 37 264 - -
Phco9g01262 820 MobiDBLite consensus disorder prediction 265 287 - -
Phco9g01262 820 Pfam Leucine rich repeat 127 185 IPR001611 GO:0005515
Phco9g01262 820 Gene3D Phosphorylase Kinase; domain 1 491 607 - -
Phco9g01262 820 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 75 801 - -
Phco9g01262 820 Pfam Leucine rich repeat N-terminal domain 38 77 IPR013210 -
Phco9g01262 820 SUPERFAMILY Protein kinase-like (PK-like) 504 804 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g01262 Phco-Chr9 12740353 12749186 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Phco9g01262 PK_Tyr_Ser-Thr 1.1e-43 CL0016